Literature DB >> 26585451

Design a cadA-targeted DNA probe for screening of potential bacterial cadmium biosorbents.

Bulent Icgen1, Fadime Yilmaz2.   

Abstract

Due to their metal removal ability, bacterial biosorbents can be effectively used for the treatment of wastewaters containing heavy metals. Searching for bacterial biosorbents for hazardous heavy metals like cadmium is a pivotal for remediation efforts. The gene cadA, that mediates resistance to cadmium over an ATP-dependent efflux mechanism, provides a good target for the selection of potential cadmium biosorbents. For this reason, in this study, a 36-mer-oligonucleotide DNA probe based on the entire 3.5-kb BglII-XbaI fragment of cadA operon from staphylococcal plasmid pI258 was prepared by using Vector NTI Express software. Under the hybridization conditions of 46 °C, 50 % formamide, and 0.028 M NaCl, the designed cadA probe appeared to be highly specific to the cadA-positive Staphylococcus warneri and Delftia acidovorans isolates tested. The results indicated that the newly designed cadA-targeted DNA probe has potential as a specific, sensitive, and quantitative tool in selecting and in situ screening of potential cadmium biosorbents.

Entities:  

Keywords:  Cadmium biosorbents; Cadmium removal; cadA; cadA probe

Mesh:

Substances:

Year:  2015        PMID: 26585451     DOI: 10.1007/s11356-015-5810-y

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN: 0944-1344            Impact factor:   4.223


  18 in total

1.  GenBank.

Authors:  D A Benson; I Karsch-Mizrachi; D J Lipman; J Ostell; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Estimation of the abundance of the cadmium resistance gene cadA in microbial communities in polluted estuary water.

Authors:  C Oger; T Berthe; L Quillet; S Barray; J F Chiffoleau; F Petit
Journal:  Res Microbiol       Date:  2001-09       Impact factor: 3.992

Review 3.  The identification of microorganisms by fluorescence in situ hybridisation.

Authors:  R Amann; B M Fuchs; S Behrens
Journal:  Curr Opin Biotechnol       Date:  2001-06       Impact factor: 9.740

4.  The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

Authors:  H Daims; A Brühl; R Amann; K H Schleifer; M Wagner
Journal:  Syst Appl Microbiol       Date:  1999-09       Impact factor: 4.022

5.  probeBase: an online resource for rRNA-targeted oligonucleotide probes.

Authors:  Alexander Loy; Matthias Horn; Michael Wagner
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  Improved in situ hybridization efficiency with locked-nucleic-acid-incorporated DNA probes.

Authors:  Kengo Kubota; Akiyoshi Ohashi; Hiroyuki Imachi; Hideki Harada
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

7.  Cadmium accumulation and DNA homology with metal resistance genes in sulfate-reducing bacteria.

Authors:  Naghma Naz; Hilary K Young; Nuzhat Ahmed; Geoffrey M Gadd
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

8.  Identification of population dynamics in sulfate-reducing consortia on exposure to sulfate.

Authors:  Bulent Icgen; Sue Harrison
Journal:  Res Microbiol       Date:  2006-09-18       Impact factor: 3.992

9.  Characterization of SDS-degrading Delftia acidovorans and in situ monitoring of its temporal succession in SDS-contaminated surface waters.

Authors:  Fadime Yilmaz; Bulent Icgen
Journal:  Environ Sci Pollut Res Int       Date:  2014-03-04       Impact factor: 4.223

10.  Marine macroalgae as biosorbents for cadmium and nickel in water.

Authors:  Raize Ofer; Argaman Yerachmiel; Yannai Shmuel
Journal:  Water Environ Res       Date:  2003 May-Jun       Impact factor: 1.946

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  2 in total

1.  Assessment of heat-inactivated marine Aspergillus flavus as a novel biosorbent for removal of Cd(II), Hg(II), and Pb(II) from water.

Authors:  Mohamed E Mahmoud; Gehan M El Zokm; Aida E M Farag; Mohamed S Abdelwahab
Journal:  Environ Sci Pollut Res Int       Date:  2017-06-20       Impact factor: 4.223

2.  vanA-targeted oligonucleotide DNA probe designed to monitor vancomycin- and teicoplanin-resistant bacteria in surface waters.

Authors:  Mustafa Nakipoglu; Fadime Yilmaz; Bulent Icgen
Journal:  Environ Monit Assess       Date:  2016-09-17       Impact factor: 2.513

  2 in total

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