Literature DB >> 26584373

Fragment-Based Electronic Structure Approach for Computing Nuclear Magnetic Resonance Chemical Shifts in Molecular Crystals.

Joshua D Hartman1, Gregory J O Beran1.   

Abstract

First-principles chemical shielding tensor predictions play a critical role in studying molecular crystal structures using nuclear magnetic resonance. Fragment-based electronic structure methods have dramatically improved the ability to model molecular crystal structures and energetics using high-level electronic structure methods. Here, a many-body expansion fragment approach is applied to the calculation of chemical shielding tensors in molecular crystals. First, the impact of truncating the many-body expansion at different orders and the role of electrostatic embedding are examined on a series of molecular clusters extracted from molecular crystals. Second, the ability of these techniques to assign three polymorphic forms of the drug sulfanilamide to the corresponding experimental (13)C spectra is assessed. This challenging example requires discriminating among spectra whose (13)C chemical shifts differ by only a few parts per million (ppm) across the different polymorphs. Fragment-based PBE0/6-311+G(2d,p) level chemical shielding predictions correctly assign these three polymorphs and reproduce the sulfanilamide experimental (13)C chemical shifts with 1 ppm accuracy. The results demonstrate that fragment approaches are competitive with the widely used gauge-invariant projector augmented wave (GIPAW) periodic density functional theory calculations.

Entities:  

Year:  2014        PMID: 26584373     DOI: 10.1021/ct500749h

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  9 in total

1.  Benchmark fragment-based (1)H, (13)C, (15)N and (17)O chemical shift predictions in molecular crystals.

Authors:  Joshua D Hartman; Ryan A Kudla; Graeme M Day; Leonard J Mueller; Gregory J O Beran
Journal:  Phys Chem Chem Phys       Date:  2016-07-19       Impact factor: 3.676

2.  TensorView: A software tool for displaying NMR tensors.

Authors:  Robert P Young; Corbin R Lewis; Chen Yang; Luther Wang; James K Harper; Leonard J Mueller
Journal:  Magn Reson Chem       Date:  2018-11-06       Impact factor: 2.447

3.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

4.  AFNMR: automated fragmentation quantum mechanical calculation of NMR chemical shifts for biomolecules.

Authors:  Jason Swails; Tong Zhu; Xiao He; David A Case
Journal:  J Biomol NMR       Date:  2015-08-02       Impact factor: 2.835

5.  The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine.

Authors:  Xiaozhou Li; Marcus A Neumann; Jacco van de Streek
Journal:  IUCrJ       Date:  2017-02-15       Impact factor: 4.769

6.  Bayesian probabilistic assignment of chemical shifts in organic solids.

Authors:  Manuel Cordova; Martins Balodis; Bruno Simões de Almeida; Michele Ceriotti; Lyndon Emsley
Journal:  Sci Adv       Date:  2021-11-26       Impact factor: 14.136

7.  High Level Electronic Structure Calculation of Molecular Solid-State NMR Shielding Constants.

Authors:  Corentin Poidevin; Georgi L Stoychev; Christoph Riplinger; Alexander A Auer
Journal:  J Chem Theory Comput       Date:  2022-03-30       Impact factor: 6.006

8.  Enhanced NMR Discrimination of Pharmaceutically Relevant Molecular Crystal Forms through Fragment-Based Ab Initio Chemical Shift Predictions.

Authors:  Joshua D Hartman; Graeme M Day; Gregory J O Beran
Journal:  Cryst Growth Des       Date:  2016-10-04       Impact factor: 4.076

9.  Automated Fragmentation QM/MM Calculation of NMR Chemical Shifts for Protein-Ligand Complexes.

Authors:  Xinsheng Jin; Tong Zhu; John Z H Zhang; Xiao He
Journal:  Front Chem       Date:  2018-05-08       Impact factor: 5.221

  9 in total

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