Literature DB >> 26583405

Range-Separated DFT Functionals are Necessary to Model Thio-Michael Additions.

Jennifer M Smith1, Yasaman Jami Alahmadi1, Christopher N Rowley1.   

Abstract

The textbook mechanism for the addition of a thiol to an olefin is the Michael-type addition, which involves a nucleophilic attack of a thiolate anion on an alkene to form a carbanion intermediate. Previous computational models of these reactions have proposed alternative mechanisms, as no minimum corresponding to the carbanion intermediate was present on the potential energy surface. We show that many popular pure and hybrid DFT functionals, such as PBE and B3LYP, erroneously predict that the carbanion is not an intermediate, favoring a noncovalent charge-transfer complex stabilized spuriously by delocalization error. Range-separated DFT functionals correct this problem and predict stable carbanion structures and energies. In particular, calculations using the ωB97X-D functional are in close agreement with CCSD(T) data for the structures and energies of a series of thio-carbanions. Range-separated functionals will make it possible to model the reaction mechanisms of Michael-type additions that occur in biochemistry, such as the covalent modification of a cysteine side chain by drugs containing an electrophilic double bond.

Entities:  

Year:  2013        PMID: 26583405     DOI: 10.1021/ct400773k

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  15 in total

1.  The Chemical Basis of Thiol Addition to Nitro-conjugated Linoleic Acid, a Protective Cell-signaling Lipid.

Authors:  Lucía Turell; Darío A Vitturi; E Laura Coitiño; Lourdes Lebrato; Matías N Möller; Camila Sagasti; Sonia R Salvatore; Steven R Woodcock; Beatriz Alvarez; Francisco J Schopfer
Journal:  J Biol Chem       Date:  2016-12-06       Impact factor: 5.157

2.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

3.  Covalent Modifiers: A Chemical Perspective on the Reactivity of α,β-Unsaturated Carbonyls with Thiols via Hetero-Michael Addition Reactions.

Authors:  Paul A Jackson; John C Widen; Daniel A Harki; Kay M Brummond
Journal:  J Med Chem       Date:  2016-12-20       Impact factor: 7.446

4.  Structures of the neutral and positively charged forms of the 4,4',4″-tris(N,N-phenyl-3-methylphenylamino)triphenylamine (m-MTDATA) molecule and its dimer, and charge localization in the corresponding cationic species.

Authors:  Andrey Safonov; Elena Rykova; Alexander Bagaturyants
Journal:  J Mol Model       Date:  2018-11-28       Impact factor: 1.810

5.  Automated computational screening of the thiol reactivity of substituted alkenes.

Authors:  Jennifer M Smith; Christopher N Rowley
Journal:  J Comput Aided Mol Des       Date:  2015-07-10       Impact factor: 3.686

6.  Charge localization and charge transfer in the Bebq2 monomer and dimer.

Authors:  Andrei A Safonov; Alexander A Bagaturyants
Journal:  J Mol Model       Date:  2014-08-09       Impact factor: 1.810

7.  Theoretical and Experimental Investigation of Thermodynamics and Kinetics of Thiol-Michael Addition Reactions: A Case Study of Reversible Fluorescent Probes for Glutathione Imaging in Single Cells.

Authors:  Jianwei Chen; Xiqian Jiang; Shaina Carroll; Jia Huang; Jin Wang
Journal:  Org Lett       Date:  2015-11-25       Impact factor: 6.005

8.  Mechanistic Kinetic Modeling of Thiol-Michael Addition Photopolymerizations via Photocaged "Superbase" Generators: An Analytical Approach.

Authors:  Mauro Claudino; Xinpeng Zhang; Marvin D Alim; Maciej Podgórski; Christopher N Bowman
Journal:  Macromolecules       Date:  2016-10-18       Impact factor: 5.985

9.  Aerobic damage to [FeFe]-hydrogenases: activation barriers for the chemical attachment of O2.

Authors:  Adam Kubas; David De Sancho; Robert B Best; Jochen Blumberger
Journal:  Angew Chem Int Ed Engl       Date:  2014-03-11       Impact factor: 15.336

10.  Chemoselective Installation of Amine Bonds on Proteins through Aza-Michael Ligation.

Authors:  Allyson M Freedy; Maria J Matos; Omar Boutureira; Francisco Corzana; Ana Guerreiro; Padma Akkapeddi; Víctor J Somovilla; Tiago Rodrigues; Karl Nicholls; Bangwen Xie; Gonzalo Jiménez-Osés; Kevin M Brindle; André A Neves; Gonçalo J L Bernardes
Journal:  J Am Chem Soc       Date:  2017-12-05       Impact factor: 15.419

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