Literature DB >> 26583238

Assessment of Franck-Condon Methods for Computing Vibrationally Broadened UV-vis Absorption Spectra of Flavin Derivatives: Riboflavin, Roseoflavin, and 5-Thioflavin.

Bora Karasulu1, Jan Philipp Götze1, Walter Thiel1.   

Abstract

We address the performance of the vertical and adiabatic Franck-Condon (VFC/AFC) approaches combined with time-independent or time-dependent (TI/TD) formalisms in simulating the one-photon absorption spectra of three flavin compounds with distinct structural features. Calculations were done in the gas phase and in two solvents (water, benzene) for which experimental reference measurements are available. We utilized the independent mode displaced harmonic oscillator model without or with frequency alteration (IMDHO/IMDHO-FA) and also accounted for Duschinsky mixing effects. In the initial validation on the first excited singlet state of riboflavin, the range-separated functionals, CAM-B3LYP and ωB97xD, showed the best performance, but B3LYP also gave a good compromise between peak positions and spectral topology. Large basis sets were not mandatory to obtain high-quality spectra for the selected systems. The presence of a symmetry plane facilitated the computation of vibrationally broadened spectra, since different FC variants yield similar results and the harmonic approximation holds rather well. Compared with the AFC approach, the VFC approach performed equally well or even better for all three flavins while offering several advantages, such as avoiding error-prone geometry optimization procedures on excited-state surfaces. We also explored the advantages of curvilinear displacements and of a Duschinsky treatment for the AFC spectra in cases when a rotatable group is present on the chromophore. Taken together, our findings indicate that the combination of the VFC approach with the TD formalism and the IMDHO-FA model offers the best overall performance.

Entities:  

Year:  2014        PMID: 26583238     DOI: 10.1021/ct500830a

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  Spectroscopic evidence for direct flavin-flavin contact in a bifurcating electron transfer flavoprotein.

Authors:  H Diessel Duan; Nishya Mohamed-Raseek; Anne-Frances Miller
Journal:  J Biol Chem       Date:  2020-07-13       Impact factor: 5.157

2.  General formulation of vibronic spectroscopy in internal coordinates.

Authors:  Alberto Baiardi; Julien Bloino; Vincenzo Barone
Journal:  J Chem Phys       Date:  2016-02-28       Impact factor: 3.488

3.  A proposal for a dipole-generated BLUF domain mechanism.

Authors:  Tilo Mathes; Jan P Götze
Journal:  Front Mol Biosci       Date:  2015-11-03

4.  Spectroscopic, thermodynamic and computational evidence of the locations of the FADs in the nitrogen fixation-associated electron transfer flavoprotein.

Authors:  Nishya Mohamed-Raseek; H Diessel Duan; Peter Hildebrandt; Maria Andrea Mroginski; Anne-Frances Miller
Journal:  Chem Sci       Date:  2019-06-28       Impact factor: 9.825

  4 in total

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