Literature DB >> 26580372

Development of a "First Principles" Water Potential with Flexible Monomers. II: Trimer Potential Energy Surface, Third Virial Coefficient, and Small Clusters.

Volodymyr Babin1, Gregory R Medders1, Francesco Paesani1.   

Abstract

A full-dimensional potential energy function (MB-pol) for simulations of water from the dimer to bulk phases is developed entirely from "first principles" by building upon the many-body expansion of the interaction energy. Specifically, the MB-pol potential is constructed by combining a highly accurate dimer potential energy surface [J. Chem. Theory Comput. 2013, 9, 5395] with explicit three-body and many-body polarization terms. The three-body contribution, expressed as a combination of permutationally invariant polynomials and classical polarizability, is derived from a fit to more than 12000 three-body energies calculated at the CCSD(T)/aug-cc-pVTZ level of theory, imposing the correct asymptotic behavior as predicted from "first principles". Here, the accuracy of MB-pol is demonstrated through comparison of the calculated third virial coefficient with the corresponding experimental data as well as through analysis of the relative energy differences of small clusters.

Entities:  

Year:  2014        PMID: 26580372     DOI: 10.1021/ct500079y

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  27 in total

Review 1.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

2.  Preordering of water is not needed for ice recognition by hyperactive antifreeze proteins.

Authors:  Arpa Hudait; Daniel R Moberg; Yuqing Qiu; Nathan Odendahl; Francesco Paesani; Valeria Molinero
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-09       Impact factor: 11.205

3.  Perturbation Approach for Computing Infrared Spectra of the Local Mode of Probe Molecules.

Authors:  Rui-Jie Xue; Adam Grofe; He Yin; Zexing Qu; Jiali Gao; Hui Li
Journal:  J Chem Theory Comput       Date:  2016-12-07       Impact factor: 6.006

Review 4.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

5.  A Many-Body, Fully Polarizable Approach to QM/MM Simulations.

Authors:  Eleftherios Lambros; Filippo Lipparini; Gerardo Andrés Cisneros; Francesco Paesani
Journal:  J Chem Theory Comput       Date:  2020-11-19       Impact factor: 6.006

6.  The end of ice I.

Authors:  Daniel R Moberg; Daniel Becker; Christoph W Dierking; Florian Zurheide; Bernhard Bandow; Udo Buck; Arpa Hudait; Valeria Molinero; Francesco Paesani; Thomas Zeuch
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-04       Impact factor: 11.205

7.  Sum frequency generation, calculation of absolute intensities, comparison with experiments, and two-field relaxation-based derivation.

Authors:  Kai Niu; Rudolph A Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-29       Impact factor: 11.205

8.  Smallest water clusters supporting the ice I structure.

Authors:  Kenneth D Jordan
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-18       Impact factor: 11.205

9.  The dynamics of peptide-water interactions in dialanine: An ultrafast amide I 2D IR and computational spectroscopy study.

Authors:  Chi-Jui Feng; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2017-08-28       Impact factor: 3.488

10.  Computation of Hydration Free Energies Using the Multiple Environment Single System Quantum Mechanical/Molecular Mechanical Method.

Authors:  Gerhard König; Ye Mei; Frank C Pickard; Andrew C Simmonett; Benjamin T Miller; John M Herbert; H Lee Woodcock; Bernard R Brooks; Yihan Shao
Journal:  J Chem Theory Comput       Date:  2015-12-11       Impact factor: 6.006

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