Literature DB >> 26579148

Editorial: Natural diversity in the new millennium.

Joanna M Cross1, Chiarina Darrah2, Nnadozie Oraguzie3, Nourollah Ahmadi4, Aleksandra Skirycz5.   

Abstract

Entities:  

Keywords:  biodiversity; crop improvement; natural diversity; next generation sequencing; plant biotechnology

Year:  2015        PMID: 26579148      PMCID: PMC4625155          DOI: 10.3389/fpls.2015.00897

Source DB:  PubMed          Journal:  Front Plant Sci        ISSN: 1664-462X            Impact factor:   5.753


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Natural diversity is a recurrent theme in everyday life and in research. Thus, the objective of this topic was to highlight progress or novelties that occurred in this new millennium. The topic includes many different fields as can be seen by the variety of the articles. Indeed, subjects covered include variations in strawberry aroma, diversity of protein families, and peculiar ecosystems. However, several themes connect this apparently unrelated set of articles. Unfortunately, one cannot ignore the issue of biodiversity and loss thereof. The United Nations Climate Change Conference was held in Copenhagen in 2009 to discuss ways of mediating environmental changes. No simple agreement was signed by all participating countries. That, combined with press articles has left a negative feeling. Thus, the general opinion is that the world is divided into two, the Western group environmentally friendly, and the rest of the world environmentally unfriendly. The articles reveal a more complex picture as many countries are trying to combine sustainable industries with economic realities. For instance, the Brazilian government has issued laws to safeguard the peculiar Canga ecosystems while allowing mining (Skirycz et al., 2014). Efforts are underway to produce improved oil palms to spare land (Barcelos et al., 2015). Moreover, many ecological studies can be found in the literature which highlights the international concern for loss of biodiversity. Unfortunately, biodiversity loss also applies to crops. Many landraces are abandoned as farmers adopt a few high yielding varieties. This results in a significant loss of genetic variability. Thus, more diversity was found in a disease resistance gene in rice landraces than in common varieties (Thakur et al., 2015). Once again, the articles illustrate an emphasis on collecting cultivars even for orphan crops. For instance, the Ethiopian Institute of Biodiversity houses 5000 accessions of tef, a major staple crop for the country (Assefa et al., 2015). The number represents a four-fold increase over the last 20 years. Likewise, significant resources exist for millet (Goron and Raizada, 2015). Assessment of biodiversity requires a combination of phenotypic and molecular techniques. Technological improvements have been significant in all areas. Hence, metabolomics can now detect many complex molecules such as aroma compounds. As a result, factors determining the taste of strawberry (Negri et al., 2015) and other fruits can be elucidated. However, the most spectacular change comes from the decrease in cost and enhanced speed of Next Generation Sequencing. Fifteen years ago, international consortiums sequenced a few model species and major crops. Now many universities are acquiring their own sequencing equipment. Most plants covered in the articles harbor some sequencing resources either as transcriptomics or as an annotated genome. This opens enormous possibilities for identifying new genetic variations, assessing the variability of isozymes, and associating a given phenotype with regions in the genome. Thus, sequencing reveals the enormous evolutionary potential of viruses (Huang et al., 2015). In addition, extensive diversity was found in the MAP, MAPP, MAPPP kinase families in grapevine (Çakir and Kılıçkaya, 2015). Finally, these articles illustrate the spectacular biological diversity of plants. They seem to survive in any environment, by any means. Hence, a seemingly fixed structure such as the cell wall shows remarkable flexibility in response to environmental, physiological, and genetic cues (Parrotta et al., 2015). Moreover, the richness of plant metabolism is further enhanced by symbiotic relations with microorganisms (Mousa and Raizada, 2015). However, while well described, this diversity harbors many mysteries as to biological functions, evolutionary adaptations, and physiological mechanisms. With the enhanced technologies, let's hope we can understand and safeguard our beautiful world.

Author contributions

JC, CD, and AS contacted participants; JC and AS edited manuscripts; NA and NO partly edited articles.

Conflict of interest statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
  10 in total

Review 1.  Genetic diversity and genomic resources available for the small millet crops to accelerate a New Green Revolution.

Authors:  Travis L Goron; Manish N Raizada
Journal:  Front Plant Sci       Date:  2015-03-24       Impact factor: 5.753

2.  Analysis of genetic variation and diversity of Rice stripe virus populations through high-throughput sequencing.

Authors:  Lingzhe Huang; Zefeng Li; Jianxiang Wu; Yi Xu; Xiuling Yang; Longjiang Fan; Rongxiang Fang; Xueping Zhou
Journal:  Front Plant Sci       Date:  2015-03-24       Impact factor: 5.753

3.  Target or barrier? The cell wall of early- and later-diverging plants vs cadmium toxicity: differences in the response mechanisms.

Authors:  Luigi Parrotta; Gea Guerriero; Kjell Sergeant; Giampiero Cai; Jean-Francois Hausman
Journal:  Front Plant Sci       Date:  2015-03-13       Impact factor: 5.753

4.  Oil palm natural diversity and the potential for yield improvement.

Authors:  Edson Barcelos; Sara de Almeida Rios; Raimundo N V Cunha; Ricardo Lopes; Sérgio Y Motoike; Elena Babiychuk; Aleksandra Skirycz; Sergei Kushnir
Journal:  Front Plant Sci       Date:  2015-03-27       Impact factor: 5.753

5.  Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.

Authors:  Shallu Thakur; Pankaj K Singh; Alok Das; R Rathour; M Variar; S K Prashanthi; A K Singh; U D Singh; Duni Chand; N K Singh; Tilak R Sharma
Journal:  Front Plant Sci       Date:  2015-05-21       Impact factor: 5.753

Review 6.  Genetic diversity in tef [Eragrostis tef (Zucc.) Trotter].

Authors:  Kebebew Assefa; Gina Cannarozzi; Dejene Girma; Rizqah Kamies; Solomon Chanyalew; Sonia Plaza-Wüthrich; Regula Blösch; Abiel Rindisbacher; Suhail Rafudeen; Zerihun Tadele
Journal:  Front Plant Sci       Date:  2015-03-26       Impact factor: 5.753

7.  Comparative analysis of fruit aroma patterns in the domesticated wild strawberries "Profumata di Tortona" (F. moschata) and "Regina delle Valli" (F. vesca).

Authors:  Alfredo S Negri; Domenico Allegra; Laura Simoni; Fabio Rusconi; Chiara Tonelli; Luca Espen; Massimo Galbiati
Journal:  Front Plant Sci       Date:  2015-02-11       Impact factor: 5.753

Review 8.  Biodiversity of genes encoding anti-microbial traits within plant associated microbes.

Authors:  Walaa K Mousa; Manish N Raizada
Journal:  Front Plant Sci       Date:  2015-04-10       Impact factor: 5.753

Review 9.  Canga biodiversity, a matter of mining.

Authors:  Aleksandra Skirycz; Alexandre Castilho; Cristian Chaparro; Nelson Carvalho; George Tzotzos; Jose O Siqueira
Journal:  Front Plant Sci       Date:  2014-11-24       Impact factor: 5.753

10.  Mitogen-activated protein kinase cascades in Vitis vinifera.

Authors:  Birsen Çakır; Ozan Kılıçkaya
Journal:  Front Plant Sci       Date:  2015-07-22       Impact factor: 5.753

  10 in total

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