| Literature DB >> 26578453 |
Aleksandra Salagacka-Kubiak1, Marta Żebrowska1, Agnieszka Wosiak1, Mariusz Balcerczak2, Marek Mirowski1, Ewa Balcerczak3.
Abstract
The aim of this study was to evaluate the participation of polymorphism at position C421A and mRNA expression of the ABCG2 gene in the development of peptic ulcers, which is a very common and severe disease. ABCG2, encoded by the ABCG2 gene, has been found inter alia in the gastrointestinal tract, where it plays a protective role eliminating xenobiotics from cells into the extracellular environment. The materials for the study were biopsies of gastric mucosa taken during a routine endoscopy. For genotyping by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) at position C421A, DNA was isolated from 201 samples, while for the mRNA expression level by real-time PCR, RNA was isolated from 60 patients. The control group of healthy individuals consisted of 97 blood donors. The dominant genotype in the group of peptic ulcer patients and healthy individuals was homozygous CC. No statistically significant differences between healthy individuals and the whole group of peptic ulcer patients and, likewise, between the subgroups of peptic ulcer patients (infected and uninfected with Helicobacter pylori) were found. ABCG2 expression relative to GAPDH expression was found in 38 of the 60 gastric mucosa samples. The expression level of the gene varies greatly among cases. The statistically significant differences between the intensity (p = 0.0375) of H. pylori infection and ABCG2 gene expression have been shown. It was observed that the more intense the infection, the higher the level of ABCG2 expression.Entities:
Keywords: ABCG2; C421A; Expression; Helicobacter pylori; Peptic ulcer; Polymorphism
Mesh:
Substances:
Year: 2015 PMID: 26578453 PMCID: PMC4963447 DOI: 10.1007/s13353-015-0327-0
Source DB: PubMed Journal: J Appl Genet ISSN: 1234-1983 Impact factor: 3.240
Comparison of C421A ABCG2 allele and genotype frequencies between peptic ulcer (investigated group I) and healthy individuals
| Peptic ulcer cases, | Healthy individuals, |
| |
|---|---|---|---|
| CC | 196 (97.5 %) | 95 (97.9 %) | 0.7845a |
| CA | 4 (2.0 %) | 2 (2.1 %) | |
| AA | 1 (0.5 %) | 0 (0.0 %) | |
| C | 396 (98.5 %) | 192 (99.1 %) | 0.9370b |
| A | 6 (1.5 %) | 2 (1.0 %) | |
| HWE: | 0.4960a | 0.6134b |
aχ2 test
bχ2 test with Yates’ correction
Comparison of C421A ABCG2 allele and genotype frequencies between the subgroup of patients infected with Helicobacter pylori and the subgroup of patients uninfected with H. pylori
| All peptic ulcer cases |
| ||
|---|---|---|---|
| Infected, | Uninfected, | ||
| CC | 100 (99.0 %) | 96 (96.0 %) | 0.3591a |
| CA or AA | 1 (1.0 %) | 4 (4.0 %) | |
| C | 201 (99.5 %) | 195 (97.5 %) | 0.2127a |
| A | 1 (0.5 %) | 5 (2.5 %) | |
aχ2 test with Yates’ correction
Presence of ABCG2 expression according to gender, age, presence and intensity of H. pylori infection
| Feature |
|
| |
|---|---|---|---|
| Absent | Present | ||
| Gender | 0.7749a | ||
| Female | 13 (59.1 %) | 21 (55.3 %) | |
| Male | 9 (40.9 %) | 17 (44.7 %) | |
| Age | 0.7749a | ||
| <60 years | 9 (40.9 %) | 17 (44.7 %) | |
| >60 years | 13 (59.1 %) | 21 (55.3 %) | |
|
| 0.1608a | ||
| Absent | 11 (50.0 %) | 26 (68.4 %) | |
| Present | 11 (50.0 %) | 12 (31.6 %) | |
|
| |||
| Low | 9 (81.8 %) | 5 (41.7 %) |
|
| Medium | 0 (0.0 %) | 4 (33.3 %) | |
| High | 2 (18.2 %) | 3 (25.0 %) | |
aV2 test
bχ2 test
Relative ABCG2 expression level according to gender, age, presence and intensity of H. pylori infection
| Feature |
| Relative |
| |||
|---|---|---|---|---|---|---|
| Mean | Min. | Max. | SD | |||
| Gender | 0.4957a | |||||
| Female | 21 | −0.05 | −1.28 | 1.75 | 0.82 | |
| Male | 17 | −0.22 | −1.64 | 1.28 | 0.72 | |
| Age | ||||||
| <60 years | 17 | −0.22 | −1.28 | 0.75 | 0.63 | 0.5329a |
| >60 years | 21 | −0.06 | −1.64 | 1.75 | 0.88 | |
|
| ||||||
| Absent | 26 | −0.22 | −1.64 | 1.03 | 0.68 | 0.2864a |
| Present | 12 | 0.07 | −1.19 | 1.75 | 0.95 | |
|
| ||||||
| Low | 5 | −0.55 | −1.19 | 0.67 | 0.74 |
|
| Medium | 3 | 0.08 | −0.86 | 0.75 | 0.69 | |
| High | 4 | 1.10 | 0.27 | 1.75 | 0.76 | |
aStudent’s t-test
bANOVA
Tukey’s HSD test: clow vs. medium, dmedium vs. high, elow vs. high
Fig. 1Relative expression level of ABCG2 according to the Helicobacter pylori infection intensity