Literature DB >> 26577725

Robust high-yield methodologies for (2)H and (2)H/(15)N/(13)C labeling of proteins for structural investigations using neutron scattering and NMR.

Anthony P Duff1, Karyn L Wilde2, Agata Rekas2, Vanessa Lake2, Peter J Holden3.   

Abstract

We have developed a method that has proven highly reliable for the deuteration and triple labeling ((2)H/(15)N/(13)C) of a broad range of proteins by recombinant expression in Escherichia coli BL21. Typical biomass yields are 40-80g/L wet weight, yielding 50-500mg/L purified protein. This method uses a simple, relatively inexpensive defined medium, and routinely results in a high-yield expression without need for optimization. The key elements are very tight control of expression, careful starter culture adaptation steps, media composition, and strict maintenance of aerobic conditions ensuring exponential growth. Temperature is reduced as required to prevent biological oxygen demand exceeding maximum aeration capacity. Glycerol is the sole carbon source. We have not encountered an upper limit for the size of proteins that can be expressed, achieving excellent expression for proteins from 11 to 154kDa and the quantity produced at 1L scale ensures that no small-angle neutron scattering, nuclear magnetic resonance, or neutron crystallography experiment is limited by the amount of deuterated material. Where difficulties remain, these tend to be cases of altered protein solubility due to high protein concentration and a D2O-based environment.
© 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Deuterium labeling; Protein deuteration; Recombinant expression; Triple labeling

Mesh:

Substances:

Year:  2015        PMID: 26577725     DOI: 10.1016/bs.mie.2015.06.014

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  13 in total

1.  Contrast-Matching Detergent in Small-Angle Neutron Scattering Experiments for Membrane Protein Structural Analysis and Ab Initio Modeling.

Authors:  Ryan C Oliver; Swe-Htet Naing; Kevin L Weiss; Sai Venkatesh Pingali; Raquel L Lieberman; Volker S Urban
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2.  Disulfide isomerase activity of the dynamic, trimeric Proteus mirabilis ScsC protein is primed by the tandem immunoglobulin-fold domain of ScsB.

Authors:  Emily J Furlong; Hassanul G Choudhury; Fabian Kurth; Anthony P Duff; Andrew E Whitten; Jennifer L Martin
Journal:  J Biol Chem       Date:  2018-02-28       Impact factor: 5.157

3.  A simple and robust protocol for high-yield expression of perdeuterated proteins in Escherichia coli grown in shaker flasks.

Authors:  Mengli Cai; Ying Huang; Renbin Yang; Robert Craigie; G M Clore
Journal:  J Biomol NMR       Date:  2016-10-05       Impact factor: 2.835

4.  Current status of neutron crystallography in structural biology.

Authors:  Fumiaki Kono; Kazuo Kurihara; Taro Tamada
Journal:  Biophys Physicobiol       Date:  2022-04-01

5.  Membrane permeabilization is mediated by distinct epitopes in mouse and human orthologs of the necroptosis effector, MLKL.

Authors:  Ashish Sethi; Christopher R Horne; Cheree Fitzgibbon; Karyn Wilde; Katherine A Davies; Sarah E Garnish; Annette V Jacobsen; André L Samson; Joanne M Hildebrand; Ahmad Wardak; Peter E Czabotar; Emma J Petrie; Paul R Gooley; James M Murphy
Journal:  Cell Death Differ       Date:  2022-03-09       Impact factor: 12.067

6.  A simple protocol for expression of isotope-labeled proteins in Escherichia coli grown in shaker flasks at high cell density.

Authors:  Mengli Cai; Ying Huang; Robert Craigie; G Marius Clore
Journal:  J Biomol NMR       Date:  2019-11-01       Impact factor: 2.835

7.  Platform development for expression and purification of stable isotope labeled monoclonal antibodies in Escherichia coli.

Authors:  Prasad T Reddy; Robert G Brinson; J Todd Hoopes; Colleen McClung; Na Ke; Lila Kashi; Mehmet Berkmen; Zvi Kelman
Journal:  MAbs       Date:  2018-07-30       Impact factor: 5.857

8.  Deuteration Aiming for Neutron Scattering.

Authors:  Aya Okuda; Rintaro Inoue; Ken Morishima; Tomohide Saio; Yasuhiro Yunoki; Maho Yagi-Utsumi; Hirokazu Yagi; Masahiro Shimizu; Nobuhiro Sato; Reiko Urade; Koichi Kato; Masaaki Sugiyama
Journal:  Biophys Physicobiol       Date:  2021-02-06

9.  Transient antibody-antigen interactions mediate the strain-specific recognition of a conserved malaria epitope.

Authors:  Bankala Krishnarjuna; Toshihiko Sugiki; Rodrigo A V Morales; Jeffrey Seow; Toshimichi Fujiwara; Karyn L Wilde; Raymond S Norton; Christopher A MacRaild
Journal:  Commun Biol       Date:  2018-05-31

10.  Structural comparison of protiated, H/D-exchanged and deuterated human carbonic anhydrase IX.

Authors:  K Koruza; B Lafumat; M Nyblom; B P Mahon; W Knecht; R McKenna; S Z Fisher
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-08-22       Impact factor: 7.652

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