Literature DB >> 26575920

Automated Discovery of Elementary Chemical Reaction Steps Using Freezing String and Berny Optimization Methods.

Yury V Suleimanov1,2, William H Green2.   

Abstract

We present a simple protocol which allows fully automated discovery of elementary chemical reaction steps using in cooperation double- and single-ended transition-state optimization algorithms--the freezing string and Berny optimization methods, respectively. To demonstrate the utility of the proposed approach, the reactivity of several single-molecule systems of combustion and atmospheric chemistry importance is investigated. The proposed algorithm allowed us to detect without any human intervention not only "known" reaction pathways, manually detected in the previous studies, but also new, previously "unknown", reaction pathways which involve significant atom rearrangements. We believe that applying such a systematic approach to elementary reaction path finding will greatly accelerate the discovery of new chemistry and will lead to more accurate computer simulations of various chemical processes.

Entities:  

Year:  2015        PMID: 26575920     DOI: 10.1021/acs.jctc.5b00407

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  6 in total

1.  Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Authors:  Konstantinos D Vogiatzis; Mikhail V Polynski; Justin K Kirkland; Jacob Townsend; Ali Hashemi; Chong Liu; Evgeny A Pidko
Journal:  Chem Rev       Date:  2018-10-30       Impact factor: 60.622

2.  New Insights into the (A)Synchronicity of Diels-Alder Reactions: A Theoretical Study Based on the Reaction Force Analysis and Atomic Resolution of Energy Derivatives.

Authors:  Bienfait Kabuyaya Isamura; Kevin Alan Lobb
Journal:  Molecules       Date:  2022-02-25       Impact factor: 4.411

3.  Efficient prediction of reaction paths through molecular graph and reaction network analysis.

Authors:  Yeonjoon Kim; Jin Woo Kim; Zeehyo Kim; Woo Youn Kim
Journal:  Chem Sci       Date:  2017-12-12       Impact factor: 9.825

Review 4.  A Trajectory-Based Method to Explore Reaction Mechanisms.

Authors:  Saulo A Vázquez; Xose L Otero; Emilio Martinez-Nunez
Journal:  Molecules       Date:  2018-11-30       Impact factor: 4.411

5.  Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools.

Authors:  Hirotoshi Hirai; Ryosuke Jinnouchi
Journal:  RSC Adv       Date:  2022-08-17       Impact factor: 4.036

6.  Deep Learning of Activation Energies.

Authors:  Colin A Grambow; Lagnajit Pattanaik; William H Green
Journal:  J Phys Chem Lett       Date:  2020-04-01       Impact factor: 6.475

  6 in total

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