Literature DB >> 26571046

Re-membering the body: applications of computational neuroscience to the top-down control of regeneration of limbs and other complex organs.

G Pezzulo1, M Levin.   

Abstract

A major goal of regenerative medicine and bioengineering is the regeneration of complex organs, such as limbs, and the capability to create artificial constructs (so-called biobots) with defined morphologies and robust self-repair capabilities. Developmental biology presents remarkable examples of systems that self-assemble and regenerate complex structures toward their correct shape despite significant perturbations. A fundamental challenge is to translate progress in molecular genetics into control of large-scale organismal anatomy, and the field is still searching for an appropriate theoretical paradigm for facilitating control of pattern homeostasis. However, computational neuroscience provides many examples in which cell networks - brains - store memories (e.g., of geometric configurations, rules, and patterns) and coordinate their activity towards proximal and distant goals. In this Perspective, we propose that programming large-scale morphogenesis requires exploiting the information processing by which cellular structures work toward specific shapes. In non-neural cells, as in the brain, bioelectric signaling implements information processing, decision-making, and memory in regulating pattern and its remodeling. Thus, approaches used in computational neuroscience to understand goal-seeking neural systems offer a toolbox of techniques to model and control regenerative pattern formation. Here, we review recent data on developmental bioelectricity as a regulator of patterning, and propose that target morphology could be encoded within tissues as a kind of memory, using the same molecular mechanisms and algorithms so successfully exploited by the brain. We highlight the next steps of an unconventional research program, which may allow top-down control of growth and form for numerous applications in regenerative medicine and synthetic bioengineering.

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Mesh:

Year:  2015        PMID: 26571046      PMCID: PMC4667987          DOI: 10.1039/c5ib00221d

Source DB:  PubMed          Journal:  Integr Biol (Camb)        ISSN: 1757-9694            Impact factor:   2.192


  221 in total

1.  What lies at the interface of regenerative medicine and developmental biology?

Authors:  Donald E Ingber; Michael Levin
Journal:  Development       Date:  2007-06-06       Impact factor: 6.868

Review 2.  Neural syntax: cell assemblies, synapsembles, and readers.

Authors:  György Buzsáki
Journal:  Neuron       Date:  2010-11-04       Impact factor: 17.173

Review 3.  Role of membrane potential in the regulation of cell proliferation and differentiation.

Authors:  Sarah Sundelacruz; Michael Levin; David L Kaplan
Journal:  Stem Cell Rev Rep       Date:  2009-06-27       Impact factor: 5.739

4.  Divide et impera: subgoaling reduces the complexity of probabilistic inference and problem solving.

Authors:  Domenico Maisto; Francesco Donnarumma; Giovanni Pezzulo
Journal:  J R Soc Interface       Date:  2015-03-06       Impact factor: 4.118

5.  Emergence, hierarchy and top-down causation in evolutionary biology.

Authors:  Samir Okasha
Journal:  Interface Focus       Date:  2011-08-24       Impact factor: 3.906

Review 6.  Mechanosensitive mechanisms in transcriptional regulation.

Authors:  Akiko Mammoto; Tadanori Mammoto; Donald E Ingber
Journal:  J Cell Sci       Date:  2012-07-13       Impact factor: 5.285

7.  Induction of vertebrate regeneration by a transient sodium current.

Authors:  Ai-Sun Tseng; Wendy S Beane; Joan M Lemire; Alessio Masi; Michael Levin
Journal:  J Neurosci       Date:  2010-09-29       Impact factor: 6.167

Review 8.  The symbol detachment problem.

Authors:  Giovanni Pezzulo; Cristiano Castelfranchi
Journal:  Cogn Process       Date:  2007-04-04

9.  Electrochemical regulation of budding yeast polarity.

Authors:  Armin Haupt; Alexis Campetelli; Daria Bonazzi; Matthieu Piel; Fred Chang; Nicolas Minc
Journal:  PLoS Biol       Date:  2014-12-30       Impact factor: 8.029

Review 10.  Information and efficiency in the nervous system--a synthesis.

Authors:  Biswa Sengupta; Martin B Stemmler; Karl J Friston
Journal:  PLoS Comput Biol       Date:  2013-07-25       Impact factor: 4.475

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  31 in total

Review 1.  The Cognitive Lens: a primer on conceptual tools for analysing information processing in developmental and regenerative morphogenesis.

Authors:  Santosh Manicka; Michael Levin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-10       Impact factor: 6.237

Review 2.  Top-down models in biology: explanation and control of complex living systems above the molecular level.

Authors:  Giovanni Pezzulo; Michael Levin
Journal:  J R Soc Interface       Date:  2016-11       Impact factor: 4.118

Review 3.  From cytoskeletal dynamics to organ asymmetry: a nonlinear, regulative pathway underlies left-right patterning.

Authors:  Gary McDowell; Suvithan Rajadurai; Michael Levin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-12-19       Impact factor: 6.237

Review 4.  Mechanisms of urodele limb regeneration.

Authors:  David L Stocum
Journal:  Regeneration (Oxf)       Date:  2017-12-26

Review 5.  Interplay between morphogen-directed positional information systems and physiological signaling.

Authors:  Francisco Huizar; Dharsan Soundarrajan; Ramezan Paravitorghabeh; Jeremiah Zartman
Journal:  Dev Dyn       Date:  2019-12-20       Impact factor: 3.780

Review 6.  Planarian regeneration as a model of anatomical homeostasis: Recent progress in biophysical and computational approaches.

Authors:  Michael Levin; Alexis M Pietak; Johanna Bischof
Journal:  Semin Cell Dev Biol       Date:  2018-05-01       Impact factor: 7.727

Review 7.  Bioelectric signaling as a unique regulator of development and regeneration.

Authors:  Matthew P Harris
Journal:  Development       Date:  2021-05-17       Impact factor: 6.868

Review 8.  Bistability of somatic pattern memories: stochastic outcomes in bioelectric circuits underlying regeneration.

Authors:  Giovanni Pezzulo; Joshua LaPalme; Fallon Durant; Michael Levin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-02-08       Impact factor: 6.237

9.  Reframing cognition: getting down to biological basics.

Authors:  Pamela Lyon; Fred Keijzer; Detlev Arendt; Michael Levin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-01-25       Impact factor: 6.237

Review 10.  Synthetic living machines: A new window on life.

Authors:  Mo R Ebrahimkhani; Michael Levin
Journal:  iScience       Date:  2021-05-04
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