Literature DB >> 26565278

Universal protein distributions in a model of cell growth and division.

Naama Brenner1, C M Newman2, Dino Osmanović3, Yitzhak Rabin3, Hanna Salman4, D L Stein5.   

Abstract

Protein distributions measured under a broad set of conditions in bacteria and yeast were shown to exhibit a common skewed shape, with variances depending quadratically on means. For bacteria these properties were reproduced by temporal measurements of protein content, showing accumulation and division across generations. Here we present a stochastic growth-and-division model with feedback which captures these observed properties. The limiting copy number distribution is calculated exactly, and a single parameter is found to determine the distribution shape and the variance-to-mean relation. Estimating this parameter from bacterial temporal data reproduces the measured distribution shape with high accuracy and leads to predictions for future experiments.

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Year:  2015        PMID: 26565278     DOI: 10.1103/PhysRevE.92.042713

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  8 in total

Review 1.  Sizing up the bacterial cell cycle.

Authors:  Lisa Willis; Kerwyn Casey Huang
Journal:  Nat Rev Microbiol       Date:  2017-08-14       Impact factor: 60.633

2.  Mechanical bounds to transcriptional noise.

Authors:  Stuart A Sevier; David A Kessler; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-22       Impact factor: 11.205

3.  Protein concentration fluctuations in the high expression regime: Taylor's law and its mechanistic origin.

Authors:  Alberto Stefano Sassi; Mayra Garcia-Alcala; Maximino Aldana; Yuhai Tu
Journal:  Phys Rev X       Date:  2022-03-17       Impact factor: 14.417

4.  Individuality and slow dynamics in bacterial growth homeostasis.

Authors:  Lee Susman; Maryam Kohram; Harsh Vashistha; Jeffrey T Nechleba; Hanna Salman; Naama Brenner
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-05       Impact factor: 11.205

5.  Statistical mechanics for metabolic networks during steady state growth.

Authors:  Daniele De Martino; Anna Mc Andersson; Tobias Bergmiller; Călin C Guet; Gašper Tkačik
Journal:  Nat Commun       Date:  2018-07-30       Impact factor: 14.919

6.  Phenotypic delay in the evolution of bacterial antibiotic resistance: Mechanistic models and their implications.

Authors:  Martín Carballo-Pacheco; Michael D Nicholson; Elin E Lilja; Rosalind J Allen; Bartlomiej Waclaw
Journal:  PLoS Comput Biol       Date:  2020-05-29       Impact factor: 4.475

7.  Homeostasis of protein and mRNA concentrations in growing cells.

Authors:  Jie Lin; Ariel Amir
Journal:  Nat Commun       Date:  2018-10-29       Impact factor: 14.919

8.  Multiple timescales in bacterial growth homeostasis.

Authors:  Alejandro Stawsky; Harsh Vashistha; Hanna Salman; Naama Brenner
Journal:  iScience       Date:  2021-12-28
  8 in total

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