Literature DB >> 26564977

Graph-based unsupervised feature selection and multiview clustering for microarray data.

Tripti Swarnkar1, Pabitra Mitra.   

Abstract

A challenge in bioinformatics is to analyse volumes of gene expression data generated through microarray experiments and obtain useful information. Consequently, most microarray studies demand complex data analysis to infer biologically meaningful information from such high-throughput data. Selection of informative genes is an important data analysis step to identify a set of genes which can further help in finding the biological information embedded in microarray data, and thus assists in diagnosis, prognosis and treatment of the disease. In this article we present an unsupervised feature selection technique which attempts to address the goal of explorative data analysis, unfolding the multi-faceted nature of data. It focuses on extracting multiple clustering views considering the diversity of each view from high-dimensional data. We evaluated our technique on benchmark data sets and the experimental results indicates the potential and effectiveness of the proposed model in comparison to the traditional single view clustering models, as well as other existing methods used in the literature for the studied datasets.

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Year:  2015        PMID: 26564977     DOI: 10.1007/s12038-015-9559-8

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  19 in total

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2.  Unsupervised feature selection via two-way ordering in gene expression analysis.

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Journal:  Bioinformatics       Date:  2003-07-01       Impact factor: 6.937

3.  A top-r feature selection algorithm for microarray gene expression data.

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4.  A novel significance score for gene selection and ranking.

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5.  Subspace differential coexpression analysis: problem definition and a general approach.

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6.  Clustering of High Throughput Gene Expression Data.

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Journal:  Comput Oper Res       Date:  2012-12       Impact factor: 4.008

Review 7.  Interstitial lung disease.

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Journal:  Database (Oxford)       Date:  2010-08-05       Impact factor: 3.451

Review 9.  Gene expression profiling in chronic lymphocytic leukaemia.

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Journal:  Best Pract Res Clin Haematol       Date:  2009-06       Impact factor: 3.020

10.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971

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  2 in total

1.  Multi-view feature selection for identifying gene markers: a diversified biological data driven approach.

Authors:  Sudipta Acharya; Laizhong Cui; Yi Pan
Journal:  BMC Bioinformatics       Date:  2020-12-30       Impact factor: 3.169

2.  A consensus multi-view multi-objective gene selection approach for improved sample classification.

Authors:  Sudipta Acharya; Laizhong Cui; Yi Pan
Journal:  BMC Bioinformatics       Date:  2020-09-17       Impact factor: 3.169

  2 in total

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