Literature DB >> 26563895

The mystery of the fourth clone: comparative genomic analysis of four non-typeable Streptococcus pneumoniae strains with different susceptibilities to optochin.

L N Ikryannikova1, D S Ischenko2, G G Lominadze3, A V Kanygina2, I Y Karpova2, E S Kostryukova2, N A Mayansky3, V S Skvortsov4, E N Ilina2, V M Govorun2.   

Abstract

Optochin-resistant pneumococci can be rarely caught in clinical microbiology laboratories because of the routine identification of all such strains as viridans group non-pneumococci. We were lucky to find four non-typeable Streptococcus pneumoniae clones demonstrating the different susceptibilities to optochin: one of them (Spn_13856) was resistant to optochin, while the other three (Spn_1719, Spn_27, and Spn_2298) were susceptible. Whole genome nucleotide sequences of these strains were compared to reveal the differences between the optochin-resistant and optochin-susceptible strains. Two adjacent genes coding maltose O-acetyltransferase and uridine phosphorylase which were presented in the genomes of all optochin-susceptible strains and missed in the optochin-resistant strain were revealed. Non-synonymous substitutions in 14 protein-coding genes were discovered, including the Ala49Ser mutation in the C-subunit of the F0 part of the ATP synthase rotor usually associated with pneumococcal optochin resistance. Modeling of a process of optochin interaction with the F0 part of the ATP synthase rotor indicates that the complex of optochin with "domain C" composed by wild-type C-subunits is more stable than the same complex composed of Ala49Ser mutant C-subunits.

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Year:  2015        PMID: 26563895     DOI: 10.1007/s10096-015-2516-5

Source DB:  PubMed          Journal:  Eur J Clin Microbiol Infect Dis        ISSN: 0934-9723            Impact factor:   3.267


  28 in total

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Authors:  Sandra I Aguiar; Maria João Frias; Letícia Santos; J Melo-Cristino; M Ramirez
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3.  Development of phoH as a novel signature gene for assessing marine phage diversity.

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Journal:  Appl Environ Microbiol       Date:  2011-09-16       Impact factor: 4.792

4.  Bacteremic pneumonia caused by a single clone of Streptococcus pneumoniae with different optochin susceptibilities.

Authors:  H Y Tsai; P R Hsueh; L J Teng; P I Lee; L M Huang; C Y Lee; K T Luh
Journal:  J Clin Microbiol       Date:  2000-01       Impact factor: 5.948

5.  Phenotypic and molecular characterization of optochin-resistant Streptococcus pneumoniae isolates from Brazil, with description of five novel mutations in the ATPC gene.

Authors:  Tatiana C A Pinto; Aline R V Souza; Sandrine E C M de Pina; Natália S Costa; Armando A Borges Neto; Felipe P G Neves; Vânia L C Merquior; Cícero A G Dias; José M Peralta; Lúcia M Teixeira
Journal:  J Clin Microbiol       Date:  2013-07-24       Impact factor: 5.948

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Authors:  I Derré; G Rapoport; K Devine; M Rose; T Msadek
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7.  Optochin-resistant variants of Streptococcus pneumoniae.

Authors:  R Muñoz; A Fenoll; D Vicioso; J Casal
Journal:  Diagn Microbiol Infect Dis       Date:  1990 Jan-Feb       Impact factor: 2.803

8.  Molecular basis of the optochin-sensitive phenotype of pneumococcus: characterization of the genes encoding the F0 complex of the Streptococcus pneumoniae and Streptococcus oralis H(+)-ATPases.

Authors:  A Fenoll; R Muñoz; E García; A G de la Campa
Journal:  Mol Microbiol       Date:  1994-05       Impact factor: 3.501

9.  Diversity of mutations in the atpC gene coding for the c Subunit of F0F1 ATPase in clinical isolates of optochin-resistant Streptococcus pneumoniae from Brazil.

Authors:  Cícero A Dias; Grasiela Agnes; Ana Paula G Frazzon; Filipe D Kruger; Pedro A d'Azevedo; Maria da Glória S Carvalho; Richard R Facklam; Lúcia M Teixeira
Journal:  J Clin Microbiol       Date:  2007-07-11       Impact factor: 5.948

10.  Architecturally the same, but playing a different game: the diverse species-specific roles of DivIVA proteins.

Authors:  Karan Gautam Kaval; Sven Halbedel
Journal:  Virulence       Date:  2012-06-22       Impact factor: 5.882

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Authors:  Nikita A Prianichnikov; Maja V Malakhova; Vlad V Babenko; Andrei K Larin; Evgenii I Olekhnovich; Elizaveta V Starikova; Dmitry I Chuvelev; Oksana E Glushchenko; Andrei E Samoilov; Alexander I Manolov; Boris A Kovarsky; Alexander V Tyakht; Alexander V Pavlenko; Elena N Ilina; Elena S Kostryukova
Journal:  Data Brief       Date:  2017-11-27

2.  Inhibitory effect of streptococci on the growth of M. catarrhalis strains and the diversity of putative bacteriocin-like gene loci in the genomes of S. pneumoniae and its relatives.

Authors:  L N Ikryannikova; M V Malakhova; G G Lominadze; I Yu Karpova; E S Kostryukova; N A Mayansky; A N Kruglov; E A Klimova; E S Lisitsina; E N Ilina; V M Govorun
Journal:  AMB Express       Date:  2017-12-13       Impact factor: 3.298

3.  Genomic Characterization of the Emerging Pathogen Streptococcus pseudopneumoniae.

Authors:  Geneviève Garriss; Priyanka Nannapaneni; Alexandra S Simões; Sarah Browall; Karthik Subramanian; Raquel Sá-Leão; Herman Goossens; Herminia de Lencastre; Birgitta Henriques-Normark
Journal:  mBio       Date:  2019-06-25       Impact factor: 7.867

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