Literature DB >> 15286655

Where did the BLOSUM62 alignment score matrix come from?

Sean R Eddy1.   

Abstract

Many sequence alignment programs use the BLOSUM62 score matrix to score pairs of aligned residues. Where did BLOSUM62 come from?

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Year:  2004        PMID: 15286655     DOI: 10.1038/nbt0804-1035

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  66 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-03       Impact factor: 11.205

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6.  Recognition of beta-structural motifs using hidden Markov models trained with simulated evolution.

Authors:  Anoop Kumar; Lenore Cowen
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

7.  Augmented training of hidden Markov models to recognize remote homologs via simulated evolution.

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Journal:  Bioinformatics       Date:  2009-04-23       Impact factor: 6.937

8.  MOTIPS: automated motif analysis for predicting targets of modular protein domains.

Authors:  Hugo Y K Lam; Philip M Kim; Janine Mok; Raffi Tonikian; Sachdev S Sidhu; Benjamin E Turk; Michael Snyder; Mark B Gerstein
Journal:  BMC Bioinformatics       Date:  2010-05-11       Impact factor: 3.169

9.  AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences.

Authors:  Darío Guerrero; Rocío Bautista; David P Villalobos; Francisco R Cantón; M Gonzalo Claros
Journal:  Algorithms Mol Biol       Date:  2010-06-02       Impact factor: 1.405

10.  Data mining of enzymes using specific peptides.

Authors:  Uri Weingart; Yair Lavi; David Horn
Journal:  BMC Bioinformatics       Date:  2009-12-24       Impact factor: 3.169

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