Literature DB >> 26560532

Multicenter Evaluation of the Xpert Norovirus Assay for Detection of Norovirus Genogroups I and II in Fecal Specimens.

Mark D Gonzalez1, L Claire Langley2, Blake W Buchan3, Matthew L Faron3, Melanie Maier4, Kate Templeton5, Kimberly Walker6, Elena B Popowitch7, Melissa B Miller8, Arundhati Rao6, Uwe G Liebert4, Nathan A Ledeboer3, Jan Vinjé2, C A Burnham9.   

Abstract

Norovirus is the most common cause of sporadic gastroenteritis and outbreaks worldwide. The rapid identification of norovirus has important implications for infection prevention measures and may reduce the need for additional diagnostic testing. The Xpert Norovirus assay recently received FDA clearance for the detection and differentiation of norovirus genogroups I and II (GI and GII), which account for the vast majority of infections. In this study, we evaluated the performance of the Xpert Norovirus assay with both fresh, prospectively collected (n = 914) and frozen, archived (n = 489) fecal specimens. A Centers for Disease Control and Prevention (CDC) composite reference method was used as the gold standard for comparison. For both prospective and frozen specimens, the Xpert Norovirus assay showed positive percent agreement (PPA) and negative percent agreement (NPA) values of 98.3% and 98.1% for GI and of 99.4% and 98.2% for GII, respectively. Norovirus prevalence in the prospective specimens (collected from March to May of 2014) was 9.9% (n = 90), with the majority of positives caused by genogroup II (82%, n = 74). The positive predictive value (PPV) of the Xpert Norovirus assay was 75% for GI-positive specimens, whereas it was 86.5% for GII-positive specimens. The negative predictive values (NPV) for GI and GII were 100% and 99.9%, respectively.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26560532      PMCID: PMC4702714          DOI: 10.1128/JCM.02361-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  32 in total

1.  Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR.

Authors:  Tsutomu Kageyama; Shigeyuki Kojima; Michiyo Shinohara; Kazue Uchida; Shuetsu Fukushi; Fuminori B Hoshino; Naokazu Takeda; Kazuhiko Katayama
Journal:  J Clin Microbiol       Date:  2003-04       Impact factor: 5.948

2.  Genotypic and epidemiologic trends of norovirus outbreaks in the United States, 2009 to 2013.

Authors:  Everardo Vega; Leslie Barclay; Nicole Gregoricus; S Hannah Shirley; David Lee; Jan Vinjé
Journal:  J Clin Microbiol       Date:  2013-10-30       Impact factor: 5.948

Review 3.  Advances in laboratory methods for detection and typing of norovirus.

Authors:  Jan Vinjé
Journal:  J Clin Microbiol       Date:  2014-07-02       Impact factor: 5.948

Review 4.  The epidemiology of published norovirus outbreaks: a review of risk factors associated with attack rate and genogroup.

Authors:  J E Matthews; B W Dickey; R D Miller; J R Felzer; B P Dawson; A S Lee; J J Rocks; J Kiel; J S Montes; C L Moe; J N S Eisenberg; J S Leon
Journal:  Epidemiol Infect       Date:  2012-03-26       Impact factor: 2.451

5.  Multicenter evaluation of the BioFire FilmArray gastrointestinal panel for etiologic diagnosis of infectious gastroenteritis.

Authors:  Sarah N Buss; Amy Leber; Kimberle Chapin; Paul D Fey; Matthew J Bankowski; Matthew K Jones; Margarita Rogatcheva; Kristen J Kanack; Kevin M Bourzac
Journal:  J Clin Microbiol       Date:  2015-01-14       Impact factor: 5.948

6.  Prevalence and characteristics of asymptomatic norovirus infection in the community in England.

Authors:  G Phillips; C C Tam; L C Rodrigues; B Lopman
Journal:  Epidemiol Infect       Date:  2010-03-03       Impact factor: 2.451

7.  Diagnosis of viral gastroenteritis by simultaneous detection of Adenovirus group F, Astrovirus, Rotavirus group A, Norovirus genogroups I and II, and Sapovirus in two internally controlled multiplex real-time PCR assays.

Authors:  Noortje M van Maarseveen; Els Wessels; Caroline S de Brouwer; Ann C T M Vossen; Eric C J Claas
Journal:  J Clin Virol       Date:  2010-09-09       Impact factor: 3.168

8.  Added value of multiplex Luminex Gastrointestinal Pathogen Panel (xTAG® GPP) testing in the diagnosis of infectious gastroenteritis.

Authors:  E Wessels; L G Rusman; M J A W M van Bussel; E C J Claas
Journal:  Clin Microbiol Infect       Date:  2013-10-17       Impact factor: 8.067

9.  Noroviruses: The Most Common Pediatric Viral Enteric Pathogen at a Large University Hospital After Introduction of Rotavirus Vaccination.

Authors:  Hoonmo L Koo; Frederick H Neill; Mary K Estes; Flor M Munoz; Arlin Cameron; Herbert L DuPont; Robert L Atmar
Journal:  J Pediatric Infect Dis Soc       Date:  2012-08-03       Impact factor: 3.164

10.  Novel surveillance network for norovirus gastroenteritis outbreaks, United States.

Authors:  Everardo Vega; Leslie Barclay; Nicole Gregoricus; Kara Williams; David Lee; Jan Vinjé
Journal:  Emerg Infect Dis       Date:  2011-08       Impact factor: 6.883

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  12 in total

Review 1.  Norovirus Illnesses in Children and Adolescents.

Authors:  Minesh P Shah; Aron J Hall
Journal:  Infect Dis Clin North Am       Date:  2018-03       Impact factor: 5.982

Review 2.  Reducing Uncertainty for Acute Febrile Illness in Resource-Limited Settings: The Current Diagnostic Landscape.

Authors:  Matthew L Robinson; Yukari C Manabe
Journal:  Am J Trop Med Hyg       Date:  2017-06       Impact factor: 2.345

3.  Comparison of Xpert Norovirus and RidaGene Norovirus assays for the detection of noroviruses in clinical fecal specimens.

Authors:  E Aho-Laukkanen; J J Hirvonen; K Saha
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2017-01-06       Impact factor: 3.267

4.  Temporal and Genotypic Associations of Sporadic Norovirus Gastroenteritis and Reported Norovirus Outbreaks in Middle Tennessee, 2012-2016.

Authors:  Meghana P Parikh; Simon Vandekar; Christina Moore; Linda Thomas; Nathan Britt; Bhinnata Piya; Laura S Stewart; Einas Batarseh; Lubna Hamdan; Steffany J Cavallo; Ashley M Swing; Katie N Garman; Lisha Constantine-Renna; James Chappell; Daniel C Payne; Jan Vinjé; Aron J Hall; John R Dunn; Natasha Halasa
Journal:  Clin Infect Dis       Date:  2020-12-03       Impact factor: 9.079

5.  Evaluation of RIDA®GENE norovirus GI/GII real time RT-PCR using stool specimens collected from children and adults with acute gastroenteritis.

Authors:  N Kanwar; F Hassan; L Barclay; C Langley; J Vinjé; P W Bryant; K St George; L Mosher; J M Matthews-Greer; M A Rocha; D O Beenhouwer; C J Harrison; M Moffatt; N Shastri; R Selvarangan
Journal:  J Clin Virol       Date:  2018-04-10       Impact factor: 3.168

6.  Norovirus and Sapovirus Epidemiology and Strain Characteristics among Navajo and Apache Infants.

Authors:  Lindsay R Grant; Katherine L O'Brien; Robert C Weatherholtz; Raymond Reid; Novalene Goklish; Mathuram Santosham; Umesh Parashar; Jan Vinjé
Journal:  PLoS One       Date:  2017-01-03       Impact factor: 3.240

7.  Rapid diagnosis of acute norovirus-associated gastroenteritis: evaluation of the Xpert Norovirus assay and its implementation as a 24/7 service in three hospitals in Jönköping County, Sweden.

Authors:  A J Henningsson; A Nilsson Bowers; J Nordgren; M Quttineh; A Matussek; S Haglund
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2017-05-24       Impact factor: 3.267

8.  Infection of Murine Macrophages by Salmonella enterica Serovar Heidelberg Blocks Murine Norovirus Infectivity and Virus-induced Apoptosis.

Authors:  Sudhakar S Agnihothram; Maria D S Basco; Lisa Mullis; Steven L Foley; Mark E Hart; Kidon Sung; Marli P Azevedo
Journal:  PLoS One       Date:  2015-12-14       Impact factor: 3.240

Review 9.  New Developments in Rapid Diagnostic Testing for Children.

Authors:  Mark D Gonzalez; Erin McElvania
Journal:  Infect Dis Clin North Am       Date:  2017-12-18       Impact factor: 5.982

Review 10.  Norovirus in Cancer Patients: A Review.

Authors:  Divya Samantha Kondapi; Sasirekha Ramani; Mary K Estes; Robert L Atmar; Pablo C Okhuysen
Journal:  Open Forum Infect Dis       Date:  2021-03-14       Impact factor: 3.835

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