Literature DB >> 26559750

APOBEC3H polymorphisms and susceptibility to HIV-1 infection in an Indian population.

Taeko K Naruse1, Daisuke Sakurai1, Hitoshi Ohtani1, Gaurav Sharma2, Surendra K Sharma3, Madhu Vajpayee4, Narinder K Mehra2, Gurvinder Kaur2, Akinori Kimura1.   

Abstract

Human APOBEC3H (A3H) is a member of APOBEC cytidine deaminase family intensively constraining the HIV-1 replication. A3H is known to be polymorphic with different protein stability and anti-HIV-1 activity in vitro. We recently reported that A3H haplotypes composed of two functional polymorphisms, rs139292 (N15del) and rs139297 (G105R), were associated with the susceptibility to HIV-1 infection in Japanese. To confirm the association of A3H and HIV-1 infection in another ethnic group, a total of 241 HIV-1-infected Indian individuals and ethnic-matched 286 healthy controls were analyzed for the A3H polymorphisms. The frequency of 15del allele was high in the HIV-1-infected subjects as compared with the controls (0.477 vs 0.402, odds ratio (OR)=1.36, P=0.014). Haplotype analysis showed that the frequencies of 15del-105R was high (0.475 vs 0.400, OR=1.36, permutation P=0.037) in the HIV-1-infected subjects, confirming the association of A3H polymorphisms with the susceptibility to HIV-1 infection.

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Year:  2015        PMID: 26559750     DOI: 10.1038/jhg.2015.136

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  20 in total

1.  APOBEC3H polymorphisms associated with the susceptibility to HIV-1 infection and AIDS progression in Japanese.

Authors:  Daisuke Sakurai; Yasumasa Iwatani; Hitoshi Ohtani; Taeko K Naruse; Hiroshi Terunuma; Wataru Sugiura; Akinori Kimura
Journal:  Immunogenetics       Date:  2015-02-27       Impact factor: 2.846

2.  HLA-B polymorphism in Japanese HIV-1-infected long-term surviving hemophiliacs.

Authors:  Mwansa Munkanta; Hiroshi Terunuma; Megumi Takahashi; Hideji Hanabusa; Takuma Miura; Shuichi Ikeda; Michio Sakai; Teruhisa Fujii; Yoshihiro Takahashi; Shin-ichi Oka; Juzo Matsuda; Masaaki Ishikawa; Masashi Taki; Yoshifumi Takashima; Jun-ichi Mimaya; Masahiko Ito; Akinori Kimura; Michio Yasunami
Journal:  Viral Immunol       Date:  2005       Impact factor: 2.257

3.  Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection.

Authors:  Leslie W Chinn; Minzhong Tang; Bailey D Kessing; James A Lautenberger; Jennifer L Troyer; Michael J Malasky; Carl McIntosh; Gregory D Kirk; Steven M Wolinsky; Susan P Buchbinder; Edward D Gomperts; James J Goedert; Stephen J O'Brien
Journal:  J Infect Dis       Date:  2010-12-15       Impact factor: 5.226

4.  Sole copy of Z2-type human cytidine deaminase APOBEC3H has inhibitory activity against retrotransposons and HIV-1.

Authors:  Lindi Tan; Phuong Thi Nguyen Sarkis; Tao Wang; Chunjuan Tian; Xiao-Fang Yu
Journal:  FASEB J       Date:  2008-09-30       Impact factor: 5.191

5.  A single amino acid difference in human APOBEC3H variants determines HIV-1 Vif sensitivity.

Authors:  Anjie Zhen; Tao Wang; Ke Zhao; Yong Xiong; Xiao-Fang Yu
Journal:  J Virol       Date:  2009-11-25       Impact factor: 5.103

6.  Impact of novel TRIM5alpha variants, Gly110Arg and G176del, on the anti-HIV-1 activity and the susceptibility to HIV-1 infection.

Authors:  Toshiaki Nakajima; Emi E Nakayama; Gurvinder Kaur; Hiroshi Terunuma; Jun-ich Mimaya; Hitoshi Ohtani; Narinder Mehra; Tatsuo Shioda; Akinori Kimura
Journal:  AIDS       Date:  2009-10-23       Impact factor: 4.177

7.  A naturally occurring single amino acid substitution in human TRIM5α linker region affects its anti-HIV type 1 activity and susceptibility to HIV type 1 infection.

Authors:  Emi E Nakayama; Toshiaki Nakajima; Gurvinder Kaur; Jun-ich Mimaya; Hiroshi Terunuma; Narinder Mehra; Akinori Kimura; Tatsuo Shioda
Journal:  AIDS Res Hum Retroviruses       Date:  2013-02-26       Impact factor: 2.205

8.  Antiretroelement activity of APOBEC3H was lost twice in recent human evolution.

Authors:  Molly OhAinle; Julie A Kerns; Melody M H Li; Harmit S Malik; Michael Emerman
Journal:  Cell Host Microbe       Date:  2008-09-11       Impact factor: 21.023

9.  Screening low-frequency SNPS from genome-wide association study reveals a new risk allele for progression to AIDS.

Authors:  Sigrid Le Clerc; Cédric Coulonges; Olivier Delaneau; Danielle Van Manen; Joshua T Herbeck; Sophie Limou; Ping An; Jeremy J Martinson; Jean-Louis Spadoni; Amu Therwath; Jan H Veldink; Leonard H van den Berg; Lieng Taing; Taoufik Labib; Safa Mellak; Matthieu Montes; Jean-François Delfraissy; François Schächter; Cheryl Winkler; Philippe Froguel; James I Mullins; Hanneke Schuitemaker; Jean-François Zagury
Journal:  J Acquir Immune Defic Syndr       Date:  2011-03-01       Impact factor: 3.731

10.  Reduced APOBEC3H variant anti-viral activities are associated with altered RNA binding activities.

Authors:  Anjie Zhen; Juan Du; Xiaohong Zhou; Yong Xiong; Xiao-Fang Yu
Journal:  PLoS One       Date:  2012-07-30       Impact factor: 3.240

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  11 in total

1.  An Alu Element Insertion in Intron 1 Results in Aberrant Alternative Splicing of APOBEC3G Pre-mRNA in Northern Pig-Tailed Macaques (Macaca leonina) That May Reduce APOBEC3G-Mediated Hypermutation Pressure on HIV-1.

Authors:  Xiao-Liang Zhang; Meng-Ting Luo; Jia-Hao Song; Wei Pang; Yong-Tang Zheng
Journal:  J Virol       Date:  2020-01-31       Impact factor: 5.103

2.  Recurrent Loss of APOBEC3H Activity during Primate Evolution.

Authors:  Erin I Garcia; Michael Emerman
Journal:  J Virol       Date:  2018-08-16       Impact factor: 5.103

3.  Biochemical Characterization of APOBEC3H Variants: Implications for Their HIV-1 Restriction Activity and mC Modification.

Authors:  Jiang Gu; Qihan Chen; Xiao Xiao; Fumiaki Ito; Aaron Wolfe; Xiaojiang S Chen
Journal:  J Mol Biol       Date:  2016-08-14       Impact factor: 5.469

Review 4.  The APOBEC Protein Family: United by Structure, Divergent in Function.

Authors:  Jason D Salter; Ryan P Bennett; Harold C Smith
Journal:  Trends Biochem Sci       Date:  2016-06-06       Impact factor: 13.807

5.  A Single Nucleotide Polymorphism in Human APOBEC3C Enhances Restriction of Lentiviruses.

Authors:  Cristina J Wittkopp; Madison B Adolph; Lily I Wu; Linda Chelico; Michael Emerman
Journal:  PLoS Pathog       Date:  2016-10-12       Impact factor: 6.823

6.  Stably expressed APOBEC3H forms a barrier for cross-species transmission of simian immunodeficiency virus of chimpanzee to humans.

Authors:  Zeli Zhang; Qinyong Gu; Marc de Manuel Montero; Ignacio G Bravo; Tomas Marques-Bonet; Dieter Häussinger; Carsten Münk
Journal:  PLoS Pathog       Date:  2017-12-21       Impact factor: 6.823

7.  A signature for biological heterogeneity in susceptibility to HIV infection?

Authors:  Nico Nagelkerke; Laith J Abu-Raddad; Susanne F Awad; Vivian Black; Brian Williams
Journal:  Infect Dis Model       Date:  2018-09-07

Review 8.  Type I interferon and HIV: Subtle balance between antiviral activity, immunopathogenesis and the microbiome.

Authors:  Carolina Scagnolari; Guido Antonelli
Journal:  Cytokine Growth Factor Rev       Date:  2018-03-16       Impact factor: 7.638

9.  Role of APOBEC3H in the Viral Control of HIV Elite Controller Patients.

Authors:  José M Benito; Julia Hillung; Clara Restrepo; José M Cuevas; Agathe León; Ezequiel Ruiz-Mateos; Rosario Palacios-Muñoz; Miguel Górgolas; Rafael Sanjuán; Norma Rallón
Journal:  Int J Med Sci       Date:  2018-01-01       Impact factor: 3.738

Review 10.  Feline APOBEC3s, Barriers to Cross-Species Transmission of FIV?

Authors:  Zeli Zhang; Qinyong Gu; Daniela Marino; Kyeong-Lim Lee; Il-Keun Kong; Dieter Häussinger; Carsten Münk
Journal:  Viruses       Date:  2018-04-10       Impact factor: 5.048

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