Literature DB >> 26558887

Molecular Rift: Virtual Reality for Drug Designers.

Magnus Norrby1, Christoph Grebner1, Joakim Eriksson, Jonas Boström1.   

Abstract

Recent advances in interaction design have created new ways to use computers. One example is the ability to create enhanced 3D environments that simulate physical presence in the real world--a virtual reality. This is relevant to drug discovery since molecular models are frequently used to obtain deeper understandings of, say, ligand-protein complexes. We have developed a tool (Molecular Rift), which creates a virtual reality environment steered with hand movements. Oculus Rift, a head-mounted display, is used to create the virtual settings. The program is controlled by gesture-recognition, using the gaming sensor MS Kinect v2, eliminating the need for standard input devices. The Open Babel toolkit was integrated to provide access to powerful cheminformatics functions. Molecular Rift was developed with a focus on usability, including iterative test-group evaluations. We conclude with reflections on virtual reality's future capabilities in chemistry and education. Molecular Rift is open source and can be downloaded from GitHub.

Mesh:

Year:  2015        PMID: 26558887     DOI: 10.1021/acs.jcim.5b00544

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  15 in total

Review 1.  Open source molecular modeling.

Authors:  Somayeh Pirhadi; Jocelyn Sunseri; David Ryan Koes
Journal:  J Mol Graph Model       Date:  2016-07-30       Impact factor: 2.518

2.  Fly with the flock: immersive solutions for animal movement visualization and analytics.

Authors:  Karsten Klein; Björn Sommer; Hieu T Nim; Andrea Flack; Kamran Safi; Máté Nagy; Stefan P Feyer; Ying Zhang; Kim Rehberg; Alexej Gluschkow; Michael Quetting; Wolfgang Fiedler; Martin Wikelski; Falk Schreiber
Journal:  J R Soc Interface       Date:  2019-04-26       Impact factor: 4.118

Review 3.  The Past, Present, and Future of Virtual Reality in Pharmacy Education.

Authors:  Leanne Coyne; Thayer A Merritt; Brittany L Parmentier; Rachel A Sharpton; Jody K Takemoto
Journal:  Am J Pharm Educ       Date:  2019-04       Impact factor: 2.047

4.  Tools, techniques, organisation and culture of the CADD group at Sygnature Discovery.

Authors:  Steve A St-Gallay; Colin P Sambrook-Smith
Journal:  J Comput Aided Mol Des       Date:  2016-10-31       Impact factor: 3.686

5.  Accessible virtual reality of biomolecular structural models using the Autodesk Molecule Viewer.

Authors:  Aidin R Balo; Merry Wang; Oliver P Ernst
Journal:  Nat Methods       Date:  2017-11-30       Impact factor: 28.547

6.  Peppy: A virtual reality environment for exploring the principles of polypeptide structure.

Authors:  David G Doak; Gareth S Denyer; Juliet A Gerrard; Joel P Mackay; Jane R Allison
Journal:  Protein Sci       Date:  2019-11-11       Impact factor: 6.725

Review 7.  Molecular Visualization on the Holodeck.

Authors:  Thomas D Goddard; Alan A Brilliant; Thomas L Skillman; Steven Vergenz; James Tyrwhitt-Drake; Elaine C Meng; Thomas E Ferrin
Journal:  J Mol Biol       Date:  2018-06-28       Impact factor: 5.469

8.  Pepblock Builder VR - An Open-Source Tool for Gaming-Based Bio-Edutainment in Interactive Protein Design.

Authors:  Venkata V B Yallapragada; Tianshu Xu; Sidney P Walker; Sabin Tabirca; Mark Tangney
Journal:  Front Bioeng Biotechnol       Date:  2021-05-14

9.  Assemble-And-Match: A Novel Hybrid Tool for Enhancing Education and Research in Rational Structure Based Drug Design.

Authors:  Pouya Tavousi; Reza Amin; Sina Shahbazmohamadi
Journal:  Sci Rep       Date:  2018-01-16       Impact factor: 4.379

10.  ProteinVR: Web-based molecular visualization in virtual reality.

Authors:  Kevin C Cassidy; Jan Šefčík; Yogindra Raghav; Alexander Chang; Jacob D Durrant
Journal:  PLoS Comput Biol       Date:  2020-03-31       Impact factor: 4.475

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