| Literature DB >> 26557385 |
Xian-Qiong Luo1, Chun-Yi Zhang2, Jia-Wen Zhang1, Jing-Bo Jiang1, Ai-Hua Yin3, Li Guo3, Chuan Nie1, Xu-Zai Lu1, Hua Deng4, Liang Zhang4.
Abstract
Retinopathy of prematurity (ROP) is a serious disease of preterm neonates and there are limited systematic studies of the molecular mechanisms underlying ROP. Therefore, here we performed global gene expression profiling in human fetal retinal microvascular endothelial cells (RMECs) under hypoxic conditions in vitro. Aborted fetuses were enrolled and primary RMECs were isolated from eyeballs. Cultivated cells were treated with CoCl2 to induce hypoxia. The dual-color microarray approach was adopted to compare gene expression profiling between treated RMECs and the paired untreated control. The one-class algorithm in significance analysis of microarray (SAM) software was used to screen the differentially expressed genes (DEGs) and quantitative RT-PCR (qRT-PCR) was conducted to validate the results. Gene Ontology was employed for functional enrichment analysis. There were 326 DEGs between the hypoxia-induced group and untreated group. Of these genes, 198 were upregulated in hypoxic RMECs, while the other 128 hits were downregulated. In particular, genes in the iron ion homeostasis pathway were highly enriched under hypoxic conditions. Our study indicates that dysregulation of genes involved in iron homeostasis mediating oxidative damage may be responsible for the mechanisms underlying ROP. The "oxygen plus iron" hypothesis may improve our understanding of ROP pathogenesis.Entities:
Year: 2015 PMID: 26557385 PMCID: PMC4628661 DOI: 10.1155/2015/584854
Source DB: PubMed Journal: J Ophthalmol ISSN: 2090-004X Impact factor: 1.909
Figure 1Confocal images of cultured human RMECs. (a) Immunofluorescent staining of vWF with sheep polyclonal antibody (Abcam). (b) Negative control of vWF identification. (c) Immunofluorescent staining of CD31 with mouse monoclonal antibody (Abcam). (d) Negative control of CD31 identification.
Figure 2Growth curve of human RMECs treated with various concentration of CoCl2.
Figure 3Heat map of gene expression pattern of five pairs of human RMEC subjects with dye-swap. The red color indicates upregulation and green color indicates downregulation. (a) Unsupervised clustering of 15,400 genes with a signal intensity >800 in matched RMEC samples. (b) A total of 326 (198 upregulated and 128 downregulated). DEGs in hypoxia-induced RMEC, compared with normoxia control (fold-change >2 and q < 0.05 with the SAM analysis).
The predominant enriched pathways with DEGs by Gene Ontology analysis.
| Go terms | Number of DEGs |
| Enrichment factor |
|
|---|---|---|---|---|
| GO:0006096 (glycolysis) | 10 | 1.27 | 14.3828799 | 4.03 |
| GO:0005975 (carbohydrate metabolic process) | 20 | 3.45 | 4.39476886 | 2.86 |
| GO:0006879 (cellular iron ion homeostasis) | 9 | 6.05 | 9.04066736 | 3.35 |
| GO:0001666 (response to hypoxia) | 13 | 2.95 | 4.86805166 | 0.00012243 |
| GO:0060337 (type I interferon-mediated signaling pathway) | 8 | 5.67 | 8.16576407 | 0.00018823 |
| GO:0045766 (positive regulation of angiogenesis) | 7 | 2.42 | 8.05441274 | 0.00061759 |
List of genes with altered expression involved in iron ion homeostasis.
| Gene symbol | Fold change |
| Gene description |
|---|---|---|---|
| HMOX1 | 8.53 | 0 | Heme oxygenase (decycling) 1 |
| FTL | 2.93 | 0 | Ferritin, light polypeptide |
| FTMT | 2.82 | 0 | Ferritin mitochondrial |
| FTH1 | 2.33 | 0 | Ferritin, heavy polypeptide 1 |
| FTHL17 | 2.33 | 0 | Ferritin, heavy polypeptide-like 17 |
| ABCB6 | 2.88 | 0 | ATP-binding cassette, subfamily B, member 6 |
| TFR2 | 2.16 | 0 | Transferrin receptor 2 |
| TFR1 | 2.00 | 0 | TFRC, transferrin receptor |
| MFI2 | −2.04 | 0.17 | Antigen p97 (melanoma associated) |
| HIF1A | −2.27 | 0 | Hypoxia inducible factor 1, alpha subunit |
Figure 4Comparison of gene expression changes from microarray and qRT-PCR.