Literature DB >> 26553994

Directed evolution of the tryptophan synthase β-subunit for stand-alone function recapitulates allosteric activation.

Andrew R Buller1, Sabine Brinkmann-Chen1, David K Romney1, Michael Herger1, Javier Murciano-Calles1, Frances H Arnold2.   

Abstract

Enzymes in heteromeric, allosterically regulated complexes catalyze a rich array of chemical reactions. Separating the subunits of such complexes, however, often severely attenuates their catalytic activities, because they can no longer be activated by their protein partners. We used directed evolution to explore allosteric regulation as a source of latent catalytic potential using the β-subunit of tryptophan synthase from Pyrococcus furiosus (PfTrpB). As part of its native αββα complex, TrpB efficiently produces tryptophan and tryptophan analogs; activity drops considerably when it is used as a stand-alone catalyst without the α-subunit. Kinetic, spectroscopic, and X-ray crystallographic data show that this lost activity can be recovered by mutations that reproduce the effects of complexation with the α-subunit. The engineered PfTrpB is a powerful platform for production of Trp analogs and for further directed evolution to expand substrate and reaction scope.

Entities:  

Keywords:  PLP; allostery; noncanonical amino acid; protein engineering

Mesh:

Substances:

Year:  2015        PMID: 26553994      PMCID: PMC4664345          DOI: 10.1073/pnas.1516401112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  49 in total

1.  Conformational Changes in the tryptophan synthase from a hyperthermophile upon alpha2beta2 complex formation: crystal structure of the complex.

Authors:  Soo Jae Lee; Kyoko Ogasahara; Jichun Ma; Kazuya Nishio; Masami Ishida; Yuriko Yamagata; Tomitake Tsukihara; Katsuhide Yutani
Journal:  Biochemistry       Date:  2005-08-30       Impact factor: 3.162

2.  Mechanism of mutual activation of the tryptophan synthase alpha and beta subunits. Analysis of the reaction specificity and substrate-induced inactivation of active site and tunnel mutants of the beta subunit.

Authors:  S A Ahmed; S B Ruvinov; A M Kayastha; E W Miles
Journal:  J Biol Chem       Date:  1991-11-15       Impact factor: 5.157

3.  Tryptophan synthase: structure and function of the monovalent cation site.

Authors:  Adam T Dierkers; Dimitri Niks; Ilme Schlichting; Michael F Dunn
Journal:  Biochemistry       Date:  2009-11-24       Impact factor: 3.162

4.  Mutations in the contact region between the alpha and beta subunits of tryptophan synthase alter subunit interaction and intersubunit communication.

Authors:  R Rowlett; L H Yang; S A Ahmed; P McPhie; K H Jhee; E W Miles
Journal:  Biochemistry       Date:  1998-03-03       Impact factor: 3.162

5.  Hot spots for allosteric regulation on protein surfaces.

Authors:  Kimberly A Reynolds; Richard N McLaughlin; Rama Ranganathan
Journal:  Cell       Date:  2011-12-23       Impact factor: 41.582

6.  Surface sites for engineering allosteric control in proteins.

Authors:  Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

7.  How good are my data and what is the resolution?

Authors:  Philip R Evans; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

8.  Rational engineering of enzyme allosteric regulation through sequence evolution analysis.

Authors:  Jae-Seong Yang; Sang Woo Seo; Sungho Jang; Gyoo Yeol Jung; Sanguk Kim
Journal:  PLoS Comput Biol       Date:  2012-07-12       Impact factor: 4.475

9.  Enhancing allosteric inhibition in Thermus thermophilus Phosphofructokinase.

Authors:  Maria S McGresham; Gregory D Reinhart
Journal:  Biochemistry       Date:  2015-01-14       Impact factor: 3.162

10.  The role of distant mutations and allosteric regulation on LovD active site dynamics.

Authors:  Gonzalo Jiménez-Osés; Sílvia Osuna; Xue Gao; Michael R Sawaya; Lynne Gilson; Steven J Collier; Gjalt W Huisman; Todd O Yeates; Yi Tang; K N Houk
Journal:  Nat Chem Biol       Date:  2014-04-13       Impact factor: 15.040

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  43 in total

1.  Synthesis of β-Branched Tryptophan Analogues Using an Engineered Subunit of Tryptophan Synthase.

Authors:  Michael Herger; Paul van Roye; David K Romney; Sabine Brinkmann-Chen; Andrew R Buller; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2016-07-01       Impact factor: 15.419

2.  Improved Synthesis of 4-Cyanotryptophan and Other Tryptophan Analogues in Aqueous Solvent Using Variants of TrpB from Thermotoga maritima.

Authors:  Christina E Boville; David K Romney; Patrick J Almhjell; Michaela Sieben; Frances H Arnold
Journal:  J Org Chem       Date:  2018-04-27       Impact factor: 4.354

3.  Analysis of allosteric communication in a multienzyme complex by ancestral sequence reconstruction.

Authors:  Michael Schupfner; Kristina Straub; Florian Busch; Rainer Merkl; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-23       Impact factor: 11.205

4.  Tailoring Tryptophan Synthase TrpB for Selective Quaternary Carbon Bond Formation.

Authors:  Markus Dick; Nicholas S Sarai; Michael W Martynowycz; Tamir Gonen; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2019-12-06       Impact factor: 15.419

Review 5.  A mechanistic view of enzyme evolution.

Authors:  Gloria Yang; Charlotte M Miton; Nobuhiko Tokuriki
Journal:  Protein Sci       Date:  2020-08       Impact factor: 6.725

6.  Allosteric inhibitors of Mycobacterium tuberculosis tryptophan synthase.

Authors:  Karolina Michalska; Changsoo Chang; Natalia I Maltseva; Robert Jedrzejczak; Gregory T Robertson; Fabian Gusovsky; Patrick McCarren; Stuart L Schreiber; Partha P Nag; Andrzej Joachimiak
Journal:  Protein Sci       Date:  2020-01-20       Impact factor: 6.725

7.  Modular control of l-tryptophan isotopic substitution via an efficient biosynthetic cascade.

Authors:  Clayton M Thompson; Allwin D McDonald; Hanming Yang; Silvia Cavagnero; Andrew R Buller
Journal:  Org Biomol Chem       Date:  2020-06-10       Impact factor: 3.876

8.  Direct Enzymatic Synthesis of a Deep-Blue Fluorescent Noncanonical Amino Acid from Azulene and Serine.

Authors:  Ella J Watkins; Patrick J Almhjell; Frances H Arnold
Journal:  Chembiochem       Date:  2019-11-18       Impact factor: 3.164

9.  Tryptophan Synthase Uses an Atypical Mechanism To Achieve Substrate Specificity.

Authors:  Andrew R Buller; Paul van Roye; Javier Murciano-Calles; Frances H Arnold
Journal:  Biochemistry       Date:  2016-12-13       Impact factor: 3.162

10.  Generation of a Stand-Alone Tryptophan Synthase α-Subunit by Mimicking an Evolutionary Blueprint.

Authors:  Michael Schupfner; Florian Busch; Vicki H Wysocki; Reinhard Sterner
Journal:  Chembiochem       Date:  2019-08-28       Impact factor: 3.164

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