Literature DB >> 22196731

Hot spots for allosteric regulation on protein surfaces.

Kimberly A Reynolds1, Richard N McLaughlin, Rama Ranganathan.   

Abstract

Recent work indicates a general architecture for proteins in which sparse networks of physically contiguous and coevolving amino acids underlie basic aspects of structure and function. These networks, termed sectors, are spatially organized such that active sites are linked to many surface sites distributed throughout the structure. Using the metabolic enzyme dihydrofolate reductase as a model system, we show that: (1) the sector is strongly correlated to a network of residues undergoing millisecond conformational fluctuations associated with enzyme catalysis, and (2) sector-connected surface sites are statistically preferred locations for the emergence of allosteric control in vivo. Thus, sectors represent an evolutionarily conserved "wiring" mechanism that can enable perturbations at specific surface positions to rapidly initiate conformational control over protein function. These findings suggest that sectors enable the evolution of intermolecular communication and regulation.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22196731      PMCID: PMC3414429          DOI: 10.1016/j.cell.2011.10.049

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  46 in total

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9.  Allosteric communication in dihydrofolate reductase: signaling network and pathways for closed to occluded transition and back.

Authors:  Jie Chen; Ruxandra I Dima; D Thirumalai
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  146 in total

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Journal:  Phys Biol       Date:  2017-04-28       Impact factor: 2.583

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Review 10.  The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation.

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