Literature DB >> 26548613

Host-Microbe Protein Interactions during Bacterial Infection.

Devin K Schweppe1, Christopher Harding2, Juan D Chavez1, Xia Wu1, Elizabeth Ramage1, Pradeep K Singh2, Colin Manoil1, James E Bruce3.   

Abstract

Interspecies protein-protein interactions are essential mediators of infection. While bacterial proteins required for host cell invasion and infection can be identified through bacterial mutant library screens, information about host target proteins and interspecies complex structures has been more difficult to acquire. Using an unbiased chemical crosslinking/mass spectrometry approach, we identified interspecies protein-protein interactions in human lung epithelial cells infected with Acinetobacter baumannii. These efforts resulted in identification of 3,076 crosslinked peptide pairs and 46 interspecies protein-protein interactions. Most notably, the key A. baumannii virulence factor, OmpA, was identified as crosslinked to host proteins involved in desmosomes, specialized structures that mediate host cell-to-cell adhesion. Co-immunoprecipitation and transposon mutant experiments were used to verify these interactions and demonstrate relevance for host cell invasion and acute murine lung infection. These results shed new light on A. baumannii-host protein interactions and their structural features, and the presented approach is generally applicable to other systems.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26548613      PMCID: PMC4756654          DOI: 10.1016/j.chembiol.2015.09.015

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  83 in total

1.  Identification of cross-linked peptides from large sequence databases.

Authors:  Oliver Rinner; Jan Seebacher; Thomas Walzthoeni; Lukas N Mueller; Martin Beck; Alexander Schmidt; Markus Mueller; Ruedi Aebersold
Journal:  Nat Methods       Date:  2008-03-09       Impact factor: 28.547

2.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

3.  Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii.

Authors:  Larry A Gallagher; Elizabeth Ramage; Eli J Weiss; Matthew Radey; Hillary S Hayden; Kiara G Held; Holly K Huse; Daniel V Zurawski; Mitchell J Brittnacher; Colin Manoil
Journal:  J Bacteriol       Date:  2015-04-06       Impact factor: 3.490

4.  Acinetobacter baumannii outer membrane protein A induces dendritic cell death through mitochondrial targeting.

Authors:  Jun Sik Lee; Chul Hee Choi; Jung Wook Kim; Je Chul Lee
Journal:  J Microbiol       Date:  2010-06-23       Impact factor: 3.422

5.  In vivo protein interaction network identified with a novel real-time cross-linked peptide identification strategy.

Authors:  Chad R Weisbrod; Juan D Chavez; Jimmy K Eng; Li Yang; Chunxiang Zheng; James E Bruce
Journal:  J Proteome Res       Date:  2013-02-28       Impact factor: 4.466

6.  A novel genetic system to detect protein-protein interactions.

Authors:  S Fields; O Song
Journal:  Nature       Date:  1989-07-20       Impact factor: 49.962

Review 7.  It's the machine that matters: Predicting gene function and phenotype from protein networks.

Authors:  Peggy I Wang; Edward M Marcotte
Journal:  J Proteomics       Date:  2010-07-15       Impact factor: 4.044

8.  Characterisation of a new Leishmania META gene and genomic analysis of the META cluster.

Authors:  Camila S Ramos; Fernando A L Franco; Deborah F Smith; Silvia R B Uliana
Journal:  FEMS Microbiol Lett       Date:  2004-09-01       Impact factor: 2.742

9.  The quantitative proteome of a human cell line.

Authors:  Martin Beck; Alexander Schmidt; Johan Malmstroem; Manfred Claassen; Alessandro Ori; Anna Szymborska; Franz Herzog; Oliver Rinner; Jan Ellenberg; Ruedi Aebersold
Journal:  Mol Syst Biol       Date:  2011-11-08       Impact factor: 11.429

10.  Dual host-virus arms races shape an essential housekeeping protein.

Authors:  Ann Demogines; Jonathan Abraham; Hyeryun Choe; Michael Farzan; Sara L Sawyer
Journal:  PLoS Biol       Date:  2013-05-28       Impact factor: 8.029

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  49 in total

1.  Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers.

Authors:  Xuefei Zhong; Arti T Navare; Juan D Chavez; Jimmy K Eng; Devin K Schweppe; James E Bruce
Journal:  J Proteome Res       Date:  2016-11-30       Impact factor: 4.466

Review 2.  Clinical and Pathophysiological Overview of Acinetobacter Infections: a Century of Challenges.

Authors:  Darren Wong; Travis B Nielsen; Robert A Bonomo; Paul Pantapalangkoor; Brian Luna; Brad Spellberg
Journal:  Clin Microbiol Rev       Date:  2017-01       Impact factor: 26.132

Review 3.  Elucidation of host-pathogen protein-protein interactions to uncover mechanisms of host cell rewiring.

Authors:  Charlotte Nicod; Amir Banaei-Esfahani; Ben C Collins
Journal:  Curr Opin Microbiol       Date:  2017-08-11       Impact factor: 7.934

4.  XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data.

Authors:  Devin K Schweppe; Chunxiang Zheng; Juan D Chavez; Arti T Navare; Xia Wu; Jimmy K Eng; James E Bruce
Journal:  Bioinformatics       Date:  2016-04-29       Impact factor: 6.937

5.  Spectral Library Searching To Identify Cross-Linked Peptides.

Authors:  Devin K Schweppe; Juan D Chavez; Arti T Navare; Xia Wu; Bianca Ruiz; Jimmy K Eng; Henry Lam; James E Bruce
Journal:  J Proteome Res       Date:  2016-04-28       Impact factor: 4.466

6.  Light-Activated Triazabutadienes for the Modification of a Viral Surface.

Authors:  Stephanie M Jensen; Flora W Kimani; John C Jewett
Journal:  Chembiochem       Date:  2016-10-21       Impact factor: 3.164

7.  Identification of Cross-linked Peptides Using Isotopomeric Cross-linkers.

Authors:  Jie Luo; Jacob Bassett; Jeff Ranish
Journal:  J Am Soc Mass Spectrom       Date:  2019-06-05       Impact factor: 3.109

8.  Mango: A General Tool for Collision Induced Dissociation-Cleavable Cross-Linked Peptide Identification.

Authors:  Jared P Mohr; Poorna Perumalla; Juan D Chavez; Jimmy K Eng; James E Bruce
Journal:  Anal Chem       Date:  2018-04-27       Impact factor: 6.986

9.  Visualization of Host-Polerovirus Interaction Topologies Using Protein Interaction Reporter Technology.

Authors:  Stacy L DeBlasio; Juan D Chavez; Mariko M Alexander; John Ramsey; Jimmy K Eng; Jaclyn Mahoney; Stewart M Gray; James E Bruce; Michelle Cilia
Journal:  J Virol       Date:  2015-12-09       Impact factor: 5.103

10.  In Vivo Conformational Dynamics of Hsp90 and Its Interactors.

Authors:  Juan D Chavez; Devin K Schweppe; Jimmy K Eng; James E Bruce
Journal:  Cell Chem Biol       Date:  2016-06-23       Impact factor: 8.116

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