| Literature DB >> 26543586 |
Ida E Bailey1, André Backes2, Patrick T Walsh3, Kate V Morgan1, Simone L Meddle4, Susan D Healy1.
Abstract
In nature, many animals build structures that can be readily measured at the scale of their gross morphology (e.g. length, volume and weight). Capturing individuality as can be done with the structures designed and built by human architects or artists, however, is more challenging. Here, we tested whether computer-aided image texture classification approaches can be used to describe textural variation in the nests of weaverbirds (Ploceus species) in order to attribute nests to the individual weaverbird that built them. We found that a computer-aided texture analysis approach does allow the assignment of a signature to weaverbirds' nests. We suggest that this approach will be a useful tool with which to examine individual variation across a range of animal constructions, not just for nests.Entities:
Keywords: biological structures; classification; individual differences; nest building; texture analysis
Year: 2015 PMID: 26543586 PMCID: PMC4632550 DOI: 10.1098/rsos.150074
Source DB: PubMed Journal: R Soc Open Sci ISSN: 2054-5703 Impact factor: 2.963
Possible interpretation of computer-aided texture analysis methods of the different levels of classification accuracy (attribution of a nest to its builder) that could be achieved from the surface texture of weaverbird nests.
| classification accuracy | possible interpretation of computer-aided texture analysis methods |
|---|---|
| chance or below | cannot be used to attribute nests accurately to the male weaverbird that built them even though there is high within-individual consistency in weave pattern |
| there is no significant within-individual consistency in birds' weave pattern | |
| above chance | can be used with only limited accuracy to attribute nests to the male that built them despite high within-individual consistency in weave pattern |
| are very effective for attributing nests to the male that built them, but there is very limited within individual consistency in weave pattern (only some males are consistent or all males are moderately consistent) | |
| very high | are very effective for accurately attributing nests to the male that built them and there is high within-individual consistency in weave pattern |
Figure 1.Photographs of all six faces of one village weaver nest. In the wild, nests are built so that the entrance faces down. The yellow triangles mark the entrance tunnel and the violet circles the back wall of the nest chamber.
A summary of the contents of, and texture analysis classification accuracy in, each of the four weaverbird nest datasets. (For each dataset: the number of male weaver birds (all birds had multiple nests), the total number of nests, the mean number of nests per male weaver bird, the chance of attributing a nest to the male that built it at random, the percentage of the 465 possible classification approaches that performed better than chance, the performance of the classification approach that achieved the highest classification accuracy across all datasets and the classification success of the classification approach that achieved the highest classification accuracy in that dataset. For the most accurate classification approach in each dataset, the nest images and texture analysis methods that approach included: DCT, discrete cosine transform; WT, wavelet transform; GF, Gabor filter; VFD, volumetric fractal dimension.)
| texture analysis approaches | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| dataset | most accurate approach over all datasets | most accurate approach (dataset specific) | ||||||||
| species | year | no. males with multiple nests | total no. nests | nests per male ( | chance of correctly attributing a nest to a male at random (%) | approaches performing above chance (of 465) (%) | classification success (%) | classification success (%) | nests images used | analysis methods used |
| village | 2008 | 6 | 23 | 3.83±0.48 | 16.67 | 33 | 43.48 | 69.57 | back, front | DCT, WT |
| masked | 2008 | 14 | 72 | 5.14±0.59 | 7.14 | 57 | 19.30 | 33.33 | back, bottom, top | DCT, GF, WT |
| masked | 2009 | 7 | 23 | 3.29±0.29 | 14.29 | 39 | 63.34 | 81.82 | bottom | VFD |
| masked | 2008+2009 | 18a | 96 | 5.33±0.70 | 5.56 | 52 | 15.28 | 28.57 | top | WT |
aThere are 18 rather than 21 males in the masked weaver 2008/2009 dataset because three males that built multiple nests both years appear in both 2008 and 2009 datasets. One male only built one nest in one of the years but multiple nests in the other year such that the single nest is only included in the combined dataset making 96 rather than 95 nests in total.
Figure 2.Image processing steps to remove small objects and background. (a) Original image; (b) binary image; (c) image after closing operation; (d) removing of all connected components from the binary image associated to noise; and (e) original image without noise and background.
Figure 3.The process of refining the texture descriptors considered in a classification approach.
Rows contain information on the classification accuracy of different classification approaches in a given dataset and the columns represent the different classification approaches. (These classification approaches are those we found to have the highest classification accuracy in specific datasets (dataset of origin). The dataset of origin of each classification approach is indicated in the column headings. The classification accuracy of each approach in its dataset of origin is highlighted in italics. UC, unable to classify.)
| most accurate approach for | ||||||
|---|---|---|---|---|---|---|
| dataset | chance (%) | best overall approach (%) | village 2008 (%) | masked 2008 (%) | masked 2009 (%) | masked 2008+2009 (%) |
| village 2008 | 16.67 | 43.48 | UC | UC | UC | |
| masked 2008 | 7.14 | 19.30 | 17.24 | 14.04 | 26.23 | |
| masked 2009 | 14.29 | 63.34 | 18.18 | UC | 27.27 | |
| masked 2008+2009 | 5.56 | 15.28 | 4.05 | 8.33 | UC | |
Figure 4.The classification accuracy in each of the four datasets of all 465 possible classification approaches. Each tile represents a different dataset and each cell in the tile represents one of the 465 classification approaches tested. Rows of cells represent the nest face(s) used in the analysis approach: rows 1 to 4=single nest face, rows 5 to 10=two nest faces, rows 11 to 14=three nest faces, row 15=four nest faces. Columns of cells represent the analysis methods/combination of methods used in the analysis approach: columns 1 to 5=single texture descriptor, columns 6 to 15=two analysis methods, columns 16 to 25=three analysis methods, columns 26 to 30=four analysis methods, column 31=five analysis methods. The classification success (%) of each analysis approach is indicated by the darkness of its pixel. Zero (white)=unable to classify.
Figure 5.The classification accuracy (% of nests successfully attributed to the male that built them) achieved by: (a) assigning nests to males using the best texture analysis approach found for each dataset, (b) assigning nests to males at random (chance).