Literature DB >> 26542225

CASTB (the comprehensive analysis server for the Mycobacterium tuberculosis complex): A publicly accessible web server for epidemiological analyses, drug-resistance prediction and phylogenetic comparison of clinical isolates.

Hiroki Iwai1, Masako Kato-Miyazawa1, Teruo Kirikae1, Tohru Miyoshi-Akiyama2.   

Abstract

Entities:  

Keywords:  CASTB; M. tuberculosis complex; Next-generation sequencers; Whole-genome sequencing

Mesh：

Substances：

Year:  2015        PMID： 26542225     DOI： 10.1016/j.tube.2015.09.002

Source DB:  PubMed          Journal:  Tuberculosis (Edinb)        ISSN： 1472-9792            Impact factor:   3.131


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  20 in total

Review 1.  A review: antimicrobial resistance data mining models and prediction methods study for pathogenic bacteria.

Authors:  Xinxing Li; Ziyi Zhang; Buwen Liang; Fei Ye; Weiwei Gong
Journal:  J Antibiot (Tokyo)       Date:  2021-09-14       Impact factor: 2.649

2.  In silico region of difference (RD) analysis of Mycobacterium tuberculosis complex from sequence reads using RD-Analyzer.

Authors:  Kiatichai Faksri; Eryu Xia; Jun Hao Tan; Yik-Ying Teo; Rick Twee-Hee Ong
Journal:  BMC Genomics       Date:  2016-11-02       Impact factor: 3.969

Review 3.  Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review.

Authors:  F Tagini; G Greub
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2017-06-21       Impact factor: 3.267

4.  Genetic diversity of Mycobacterium tuberculosis isolates from Tochigi prefecture, a local region of Japan.

Authors:  Fuminori Mizukoshi; Tohru Miyoshi-Akiyama; Hiroki Iwai; Takako Suzuki; Reiko Kiritani; Teruo Kirikae; Keiji Funatogawa
Journal:  BMC Infect Dis       Date:  2017-05-25       Impact factor: 3.090

5.  Some Synonymous and Nonsynonymous gyrA Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDRsl Assays.

Authors:  Adebisi Ajileye; Nataly Alvarez; Matthias Merker; Timothy M Walker; Suriya Akter; Kerstin Brown; Danesh Moradigaravand; Thomas Schön; Sönke Andres; Viola Schleusener; Shaheed V Omar; Francesc Coll; Hairong Huang; Roland Diel; Nazir Ismail; Julian Parkhill; Bouke C de Jong; Tim E A Peto; Derrick W Crook; Stefan Niemann; Jaime Robledo; E Grace Smith; Sharon J Peacock; Claudio U Köser
Journal:  Antimicrob Agents Chemother       Date:  2017-03-24       Impact factor: 5.191

6.  MTBseq: a comprehensive pipeline for whole genome sequence analysis of Mycobacterium tuberculosis complex isolates.

Authors:  Thomas Andreas Kohl; Christian Utpatel; Viola Schleusener; Maria Rosaria De Filippo; Patrick Beckert; Daniela Maria Cirillo; Stefan Niemann
Journal:  PeerJ       Date:  2018-11-13       Impact factor: 2.984

7.  Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis.

Authors:  Tomotada Iwamoto; Yoshiro Murase; Shiomi Yoshida; Akio Aono; Makoto Kuroda; Tsuyoshi Sekizuka; Akifumi Yamashita; Kengo Kato; Takemasa Takii; Kentaro Arikawa; Seiya Kato; Satoshi Mitarai
Journal:  PLoS One       Date:  2019-02-28       Impact factor: 3.240

8.  Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.

Authors:  Martin Hunt; Phelim Bradley; Simon Grandjean Lapierre; Simon Heys; Mark Thomsit; Michael B Hall; Kerri M Malone; Penelope Wintringer; Timothy M Walker; Daniela M Cirillo; Iñaki Comas; Maha R Farhat; Phillip Fowler; Jennifer Gardy; Nazir Ismail; Thomas A Kohl; Vanessa Mathys; Matthias Merker; Stefan Niemann; Shaheed Vally Omar; Vitali Sintchenko; Grace Smith; Dick van Soolingen; Philip Supply; Sabira Tahseen; Mark Wilcox; Irena Arandjelovic; Tim E A Peto; Derrick W Crook; Zamin Iqbal
Journal:  Wellcome Open Res       Date:  2019-12-02

9.  SpoTyping: fast and accurate in silico Mycobacterium spoligotyping from sequence reads.

Authors:  Eryu Xia; Yik-Ying Teo; Rick Twee-Hee Ong
Journal:  Genome Med       Date:  2016-02-17       Impact factor: 11.117

10.  MIRU-profiler: a rapid tool for determination of 24-loci MIRU-VNTR profiles from assembled genomes of Mycobacterium tuberculosis.

Authors:  Rahim Rajwani; Sheeba Shehzad; Gilman Kit Hang Siu
Journal:  PeerJ       Date:  2018-07-11       Impact factor: 2.984
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