Literature DB >> 34522024

A review: antimicrobial resistance data mining models and prediction methods study for pathogenic bacteria.

Xinxing Li1, Ziyi Zhang1, Buwen Liang1, Fei Ye2, Weiwei Gong3.   

Abstract

Antimicrobials have paved the way for medical and social development over the last century and are indispensable for treating infections in humans and animals. The dramatic spread and diversity of antibiotic-resistant pathogens have significantly reduced the efficacy of essentially all antibiotic classes and is a global problem affecting human and animal health. Antimicrobial resistance is influenced by complex factors such as resistance genes and dosing, which are highly nonlinear, time-lagged and multivariate coupled, and the amount of resistance data is large and redundant, making it difficult to predict and analyze. Based on machine learning methods and data mining techniques, this paper reviews (1) antimicrobial resistance data storage and analysis techniques, (2) antimicrobial resistance assessment methods and the associated risk assessment methods for antimicrobial resistance, and (3) antimicrobial resistance prediction methods. Finally, the current research results on antimicrobial resistance and the development trend are summarized to provide a systematic and comprehensive reference for the research on antimicrobial resistance.
© 2021. The Author(s), under exclusive licence to the Japan Antibiotics Research Association.

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Year:  2021        PMID: 34522024     DOI: 10.1038/s41429-021-00471-w

Source DB:  PubMed          Journal:  J Antibiot (Tokyo)        ISSN: 0021-8820            Impact factor:   2.649


  43 in total

Review 1.  Access to effective antimicrobials: a worldwide challenge.

Authors:  Ramanan Laxminarayan; Precious Matsoso; Suraj Pant; Charles Brower; John-Arne Røttingen; Keith Klugman; Sally Davies
Journal:  Lancet       Date:  2015-11-18       Impact factor: 79.321

2.  Global trends in antimicrobial use in food animals.

Authors:  Thomas P Van Boeckel; Charles Brower; Marius Gilbert; Bryan T Grenfell; Simon A Levin; Timothy P Robinson; Aude Teillant; Ramanan Laxminarayan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-19       Impact factor: 11.205

Review 3.  Artificial intelligence in healthcare.

Authors:  Kun-Hsing Yu; Andrew L Beam; Isaac S Kohane
Journal:  Nat Biomed Eng       Date:  2018-10-10       Impact factor: 25.671

Review 4.  Next-Generation Machine Learning for Biological Networks.

Authors:  Diogo M Camacho; Katherine M Collins; Rani K Powers; James C Costello; James J Collins
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

5.  Deep learning in biomedicine.

Authors:  Michael Wainberg; Daniele Merico; Andrew Delong; Brendan J Frey
Journal:  Nat Biotechnol       Date:  2018-09-06       Impact factor: 54.908

Review 6.  Achieving a Predictive Understanding of Antimicrobial Stress Physiology through Systems Biology.

Authors:  Sean G Mack; Randi L Turner; Daniel J Dwyer
Journal:  Trends Microbiol       Date:  2018-03-10       Impact factor: 17.079

7.  Editorial overview: Antimicrobials: Tackling AMR in the 21st century.

Authors:  Matthew I Hutchings; Andrew W Truman; Barrie Wilkinson
Journal:  Curr Opin Microbiol       Date:  2019-10       Impact factor: 7.934

8.  A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action.

Authors:  Jason H Yang; Sarah N Wright; Meagan Hamblin; Douglas McCloskey; Miguel A Alcantar; Lars Schrübbers; Allison J Lopatkin; Sangeeta Satish; Amir Nili; Bernhard O Palsson; Graham C Walker; James J Collins
Journal:  Cell       Date:  2019-05-09       Impact factor: 41.582

9.  Antibiotic resistance in Lactococcus species from bovine milk: presence of a mutated multidrug transporter mdt(A) gene in susceptible Lactococcus garvieae strains.

Authors:  Carole Walther; Alexandra Rossano; Andreas Thomann; Vincent Perreten
Journal:  Vet Microbiol       Date:  2008-03-30       Impact factor: 3.293

10.  Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study.

Authors:  Yi-Yun Liu; Yang Wang; Timothy R Walsh; Ling-Xian Yi; Rong Zhang; James Spencer; Yohei Doi; Guobao Tian; Baolei Dong; Xianhui Huang; Lin-Feng Yu; Danxia Gu; Hongwei Ren; Xiaojie Chen; Luchao Lv; Dandan He; Hongwei Zhou; Zisen Liang; Jian-Hua Liu; Jianzhong Shen
Journal:  Lancet Infect Dis       Date:  2015-11-19       Impact factor: 25.071

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  2 in total

1.  Prediction of antimicrobial minimal inhibitory concentrations for Neisseria gonorrhoeae using machine learning models.

Authors:  Muhammad Yasir; Asad Mustafa Karim; Sumera Kausar Malik; Amal A Bajaffer; Esam I Azhar
Journal:  Saudi J Biol Sci       Date:  2022-03-04       Impact factor: 4.052

2.  Genome-Wide Mutation Scoring for Machine-Learning-Based Antimicrobial Resistance Prediction.

Authors:  Peter Májek; Lukas Lüftinger; Stephan Beisken; Thomas Rattei; Arne Materna
Journal:  Int J Mol Sci       Date:  2021-12-02       Impact factor: 5.923

  2 in total

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