Literature DB >> 26538560

Modelling stripe formation in zebrafish: an agent-based approach.

Alexandria Volkening1, Björn Sandstede2.   

Abstract

Zebrafish have distinctive black stripes and yellow interstripes that form owing to the interaction of different pigment cells. We present a two-population agent-based model for the development and regeneration of these stripes and interstripes informed by recent experimental results. Our model describes stripe pattern formation, laser ablation and mutations. We find that fish growth shortens the necessary scale for long-range interactions and that iridophores, a third type of pigment cell, help align stripes and interstripes.
© 2015 The Author(s).

Entities:  

Keywords:  agent-based model; growing domain; pattern formation; zebrafish

Mesh:

Year:  2015        PMID: 26538560      PMCID: PMC4685853          DOI: 10.1098/rsif.2015.0812

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  37 in total

1.  Formation of the adult pigment pattern in zebrafish requires leopard and obelix dependent cell interactions.

Authors:  Florian Maderspacher; Christiane Nüsslein-Volhard
Journal:  Development       Date:  2003-08       Impact factor: 6.868

2.  The sensitivity of Turing self-organization to biological feedback delays: 2D models of fish pigmentation.

Authors:  E A Gaffney; S Seirin Lee
Journal:  Math Med Biol       Date:  2013-10-01       Impact factor: 1.854

Review 3.  Zebrafish stripes as a model for vertebrate colour pattern formation.

Authors:  Ajeet Pratap Singh; Christiane Nüsslein-Volhard
Journal:  Curr Biol       Date:  2015-01-19       Impact factor: 10.834

4.  Proliferation, dispersal and patterned aggregation of iridophores in the skin prefigure striped colouration of zebrafish.

Authors:  Ajeet Pratap Singh; Ursula Schach; Christiane Nüsslein-Volhard
Journal:  Nat Cell Biol       Date:  2014-04-28       Impact factor: 28.824

5.  Temporal and cellular requirements for Fms signaling during zebrafish adult pigment pattern development.

Authors:  David M Parichy; Jessica M Turner
Journal:  Development       Date:  2003-03       Impact factor: 6.868

6.  Pigment cell organization in the hypodermis of zebrafish.

Authors:  Masashi Hirata; Kei-ichiro Nakamura; Takaaki Kanemaru; Yosaburo Shibata; Shigeru Kondo
Journal:  Dev Dyn       Date:  2003-08       Impact factor: 3.780

7.  On the embryonic origin of adult melanophores: the role of ErbB and Kit signalling in establishing melanophore stem cells in zebrafish.

Authors:  Christopher M Dooley; Alessandro Mongera; Brigitte Walderich; Christiane Nüsslein-Volhard
Journal:  Development       Date:  2013-01-30       Impact factor: 6.868

8.  Iridophores and their interactions with other chromatophores are required for stripe formation in zebrafish.

Authors:  Hans Georg Frohnhöfer; Jana Krauss; Hans-Martin Maischein; Christiane Nüsslein-Volhard
Journal:  Development       Date:  2013-07       Impact factor: 6.868

9.  Interactions with iridophores and the tissue environment required for patterning melanophores and xanthophores during zebrafish adult pigment stripe formation.

Authors:  Larissa B Patterson; David M Parichy
Journal:  PLoS Genet       Date:  2013-05-30       Impact factor: 5.917

10.  Involvement of Delta/Notch signaling in zebrafish adult pigment stripe patterning.

Authors:  Hiroki Hamada; Masakatsu Watanabe; Hiu Eunice Lau; Tomoki Nishida; Toshiaki Hasegawa; David M Parichy; Shigeru Kondo
Journal:  Development       Date:  2013-12-04       Impact factor: 6.868

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  14 in total

1.  A quantitative modelling approach to zebrafish pigment pattern formation.

Authors:  Robert N Kelsh; Christian A Yates; Jennifer P Owen
Journal:  Elife       Date:  2020-07-27       Impact factor: 8.140

2.  Spatial pattern formation in reaction-diffusion models: a computational approach.

Authors:  Wenrui Hao; Chuan Xue
Journal:  J Math Biol       Date:  2020-01-06       Impact factor: 2.259

3.  A minimally sufficient model for rib proximal-distal patterning based on genetic analysis and agent-based simulations.

Authors:  Jennifer L Fogel; Daniel L Lakeland; In Kyoung Mah; Francesca V Mariani
Journal:  Elife       Date:  2017-10-25       Impact factor: 8.140

4.  Genetic mechanism underlying sexual plasticity and its association with colour patterning in zebrafish (Danio rerio).

Authors:  Shahrbanou Hosseini; Ngoc-Thuy Ha; Henner Simianer; Clemens Falker-Gieske; Bertram Brenig; Andre Franke; Gabriele Hörstgen-Schwark; Jens Tetens; Sebastian Herzog; Ahmad Reza Sharifi
Journal:  BMC Genomics       Date:  2019-05-06       Impact factor: 3.969

Review 5.  Bridging from single to collective cell migration: A review of models and links to experiments.

Authors:  Andreas Buttenschön; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2020-12-10       Impact factor: 4.475

6.  A comprehensive survey of developmental programs reveals a dearth of tree-like lineage graphs and ubiquitous regeneration.

Authors:  Somya Mani; Tsvi Tlusty
Journal:  BMC Biol       Date:  2021-05-21       Impact factor: 7.431

7.  Long-distance communication by specialized cellular projections during pigment pattern development and evolution.

Authors:  Dae Seok Eom; Emily J Bain; Larissa B Patterson; Megan E Grout; David M Parichy
Journal:  Elife       Date:  2015-12-23       Impact factor: 8.140

8.  Iridophores as a source of robustness in zebrafish stripes and variability in Danio patterns.

Authors:  Alexandria Volkening; Björn Sandstede
Journal:  Nat Commun       Date:  2018-08-13       Impact factor: 14.919

9.  The role of intracellular signaling in the stripe formation in engineered Escherichia coli populations.

Authors:  Xiaoru Xue; Chuan Xue; Min Tang
Journal:  PLoS Comput Biol       Date:  2018-06-04       Impact factor: 4.475

10.  Topological data analysis of zebrafish patterns.

Authors:  Melissa R McGuirl; Alexandria Volkening; Björn Sandstede
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-25       Impact factor: 11.205

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