| Literature DB >> 26528330 |
Ruth K Topless1, Tanya J Flynn1, Murray Cadzow1, Lisa K Stamp2, Nicola Dalbeth3, Michael A Black1, Tony R Merriman1.
Abstract
The SLC2A9 gene, that encodes a renal uric acid reuptake transporter, has genetic variants that explain ∼3% of variance in urate levels. There are previous reports of non-additive interaction between SLC2A9 genotype and environmental factors which influence urate control. Therefore, our aim was to further investigate the general phenomenon that such non-additive interactions contribute to genotype-specific association with variance at SLC2A9. Data from 14135 European individuals were used in this analysis. The measure of variance was derived from a ranked inverse normal transformation of residuals obtained by regressing known urate-influencing factors (sex, age, and body mass index) against urate. Variant rs6449173 showed the most significant effect on serum urate variance at SLC2A9 (P = 7.9 × 10(-14)), which was maintained after accounting for the effect on average serum urate levels (P = 0.022). Noting the stronger effect in a sub-cohort that consisted of pre-menopausal women and younger men, the participants were stratified into males and pre-menopausal and post-menopausal women. This revealed a strong effect on variance in pre-menopausal women (P = 3.7 × 10(-5)) with a weak effect in post-menopausal women (P = 0.032) and no effect in men (P = 0.22). The T-allele of rs6449173, which associates with increased urate levels, was associated with the greater variance in urate. There was a non-additive interaction between rs6449173 genotype and female gender in control of serum urate levels that was driven by a greater increase in urate levels associated with the T-allele in women. Female hormones, and/or other factors they influence or are associated with (such as iron levels, temperature, testosterone) interact with SLC2A9 genotype in women to determine urate levels. The association of SLC2A9 with greater variance in pre-menopausal women may reflect the cyclical changes resulting from menstruation.Entities:
Keywords: SLC2A9; exposure; genotype; gout; interaction; urate; uric acid; variance
Year: 2015 PMID: 26528330 PMCID: PMC4604317 DOI: 10.3389/fgene.2015.00313
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Demographic and clinical details of the three data sets, and associations of clinical features with serum urate concentrations.
| FHS | ARIC | ARIC diuretics | CARDIA | CHS | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Serum urate ( | 0.308 (0.086) | – | 0.332 (0.080) | – | 0.398 (0.097) | – | 0.284 (0.087) | – | 0.328 (0.087) | – |
| Age ( | 39.4 (8.64) | 8.51 × 10-5 | 53.5 (5.58) | 0.0062 | 55.9 (5.55) | 0.015 | 40.7 (3.33) | 4.55 × 10-5 | 72.4 (5.47) | 4.75 × 10-4 |
| Females, % (n) | 53.8 (1765) | 0.44 | 54.2 (2903) | 0.29 | 65.7 (786) | 0.15 | 53.7 (803) | 0.39 | 61.1 (1710) | 0.11 |
| BMI ( | 26.4 (5.18) | 0.16 | 26.0 (4.33) | 0.14 | 29.2 (5.71) | 0.070 | 27.1 (5.85) | 0.14 | 26.2 (4.42) | 0.088 |
| Post-menopausal women, % ( | 9.0 (159) | 0.0066 | 49.8 (1447) | 0.022 | 51.0 (401) | 0.017 | 5.2 (42) | 0.0050 | 89.4 (1528) | – |
| PC1 | – | 3.04 × 10-5 | – | 1.82 × 10-5 | – | 3.75 × 10-5 | – | 7.69 × 10-7 | – | 6.84 × 10-5 |
| PC2 | – | 1.48 × 10-4 | – | 4.56 × 10-5 | – | 1.44 × 10-4 | – | 5.93 × 10-6 | – | 2.25 × 10-4 |
The influence of accounting for the rs6449173 average effect on the estimated serum urate variance effect.
| β∗ | ||||
|---|---|---|---|---|
| 5356 | ||||
| Mean effect | 0.023 | 0.002 | 8.7 × 10-56 | |
| Unadjusted variance effect | -0.153 | 0.033 | 4.1 × 10-6 | |
| Adjusted variance effect | 0.024 | 0.033 | 0.47 | |
| 3282 | ||||
| Mean effect | 0.023 | 0.002 | 2.7 × 10-38 | |
| Unadjusted variance effect | -0.192 | 0.042 | 5.8 × 10-6 | |
| Adjusted variance effect | 0.063 | 0.043 | 0.14 | |
| 1196 | ||||
| Mean effect | 0.031 | 0.004 | 2.5 × 10-12 | |
| Unadjusted variance effect | -0.117 | 0.073 | 0.11 | |
| Adjusted variance effect | 0.043 | 0.073 | 0.56 | |
| 2799 | ||||
| Mean effect | 0.023 | 0.003 | 2.0 × 10-19 | |
| Unadjusted variance effect | -0.156 | 0.045 | 4.7 × 10-4 | |
| Adjusted variance effect | -0.016 | 0.045 | 0.72 | |
| 1496 | ||||
| Mean effect | 0.026 | 0.003 | 2.6 × 10-22 | |
| Unadjusted variance effect | -0.079 | 0.062 | 0.20 | |
| Adjusted variance effect | 0.208 | 0.061 | 7.3 × 10-4 | |
| 14129 | ||||
| Mean effect | 0.024 | 0.00095 | 4.7 × 10-140 | |
| Unadjusted variance effect | -0.152 | 0.020 | 7.9 × 10-14 | |
| Adjusted variance effect | 0.047 | 0.020 | 0.022 |
Association of rs6449173 genotype with serum urate variance in sample sets stratified into men, pre-menopausal women and post-menopausal women, with adjustment for rs6449173 mean effect.
| Variance β∗ | ||||||
|---|---|---|---|---|---|---|
| ARIC | Total | 5356 | 0.024 | 0.033 | 0.47 | 0.00010 |
| Men | 2453 | -0.053 | 0.050 | 0.28 | 0.00047 | |
| Pre-menopausal women | 515 | 0.188 | 0.105 | 0.074 | 0.00624 | |
| Post-menopausal women | 1447 | 0.083 | 0.063 | 0.19 | 0.00119 | |
| FHS | Total | 3282 | 0.063 | 0.043 | 0.14 | 0.00067 |
| Men | 1517 | -0.008 | 0.063 | 0.89 | 0.00001 | |
| Pre-menopausal women | 1513 | 0.165 | 0.062 | 7.6 × 10-3 | 0.00470 | |
| Post-menopausal women | 159 | -0.015 | 0.187 | 0.93 | 0.00004 | |
| ARIC diuretics | Total | 1196 | 0.043 | 0.073 | 0.56 | 0.00029 |
| Men | 410 | -0.088 | 0.126 | 0.49 | 0.00119 | |
| Pre-menopausal women | 90 | 0.430 | 0.271 | 0.12 | 0.02811 | |
| Post-menopausal women | 401 | 0.102 | 0.128 | 0.43 | 0.00159 | |
| CHS | Total | 2799 | -0.016 | 0.045 | 0.72 | 0.00005 |
| Men | 1089 | -0.121 | 0.073 | 0.097 | 0.00253 | |
| Pre-menopausal women | 0 | – | – | – | – | |
| Post-menopausal women | 1528 | 0.093 | 0.062 | 0.13 | 0.00150 | |
| CARDIA | Total | 1496 | 0.208 | 0.061 | 7.3 × 10-4 | 0.00762 |
| Men | 693 | 0.112 | 0.092 | 0.23 | 0.00211 | |
| Pre-menopausal women | 527 | 0.231 | 0.100 | 0.022 | 0.00997 | |
| Post-menopausal women | 42 | 0.269 | 0.369 | 0.47 | 0.01304 | |
| Combined∧ | Total | 14129 | 0.047 | 0.020 | 0.022 | 0.00037 |
| Men | 6162 | -0.038 | 0.031 | 0.22 | 0.00024 | |
| Pre-menopausal women | 2645 | 0.191 | 0.046 | 3.7 × 10-5 | 0.00637 | |
| Post-menopausal women | 3577 | 0.087 | 0.040 | 0.032 | 0.00129 |
Association by linear regression and interaction of rs6449173 genotype with average serum urate levels in pre-menopausal women and post-menopausal women and men stratified by genotype.
| GG β (mmol/L), | GT β (mmol/L), | TT β (mmol/L), | Interaction term βinteraction (mmol/L), | |
|---|---|---|---|---|
| Men | 0.000 (Reference) | 0.021, 1.9 × 10-4 | 0.038, 2.1 × 10-15 | 0.000 (Reference) |
| Post-menopausal women | -0.088, <2.0 × 10-16 | -0.047, <2.0 × 10-16 | -0.023, 6.1 × 10-6 | 0.012, 3.51 × 10-6 |
| Pre-menopausal women | -0.135, <2.0 × 10-16 | -0.090, <2.0 × 10-16 | -0.060, <2.0 × 10-16 | 0.013, 2.37 × 10-6 |