Literature DB >> 26523680

The Bacterial Transcription Termination Factor Rho Coordinates Mg(2+) Homeostasis with Translational Signals.

Michelle A Kriner1, Eduardo A Groisman2.   

Abstract

The bacterial protein Rho triggers transcription termination at the ends of many operons and when transcription and translation become uncoupled. In addition to these genome wide activities, Rho implements regulation of specific genes by dictating whether RNA polymerase terminates transcription within the 5' leader region or continues into the downstream coding region. Here, we report that the Mg(2+) channel gene corA in Salmonella enterica serovar Typhimurium, which was previously thought to be constitutively expressed, is regulated by a Rho-dependent terminator located within its 5' leader region. We demonstrate that the unusually long and highly conserved corA leader mRNA can adopt two mutually exclusive conformations that determine whether or not Rho interacts with a Rho utilization site on the nascent RNA and thereby prevents transcription of the corA coding region. The RNA conformation that promotes Rho-dependent termination is favored by efficient translation of corL, a short open reading frame located within the corA leader. Thus, corA transcription is inversely coupled to corL translation. This mechanism resembles those governing expression of Salmonella's other two Mg(2+) transport genes, suggesting that Rho links Mg(2+) uptake to translational signals.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA secondary structure; Rho utilization (rut) site; Salmonella; gene regulation; short open reading frame (ORF)

Mesh:

Substances:

Year:  2015        PMID: 26523680      PMCID: PMC4964609          DOI: 10.1016/j.jmb.2015.10.020

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  46 in total

1.  Identification of an RNA-binding Site in the ATP binding domain of Escherichia coli Rho by H2O2/Fe-EDTA cleavage protection studies.

Authors:  R R Wei; J P Richardson
Journal:  J Biol Chem       Date:  2001-05-21       Impact factor: 5.157

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3.  Riboswitch control of Rho-dependent transcription termination.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

4.  Mutagenesis-based evidence for an asymmetric configuration of the ring-shaped transcription termination factor Rho.

Authors:  Makhlouf Rabhi; Veronika Gocheva; Frédérique Jacquinot; Andrea Lee; Emmanuel Margeat; Marc Boudvillain
Journal:  J Mol Biol       Date:  2010-11-06       Impact factor: 5.469

5.  The RNA-binding domain of transcription termination factor rho: isolation, characterization, and determination of sequence limits.

Authors:  D Modrak; J P Richardson
Journal:  Biochemistry       Date:  1994-07-12       Impact factor: 3.162

Review 6.  Terminator still moving forward: expanding roles for Rho factor.

Authors:  Marc Boudvillain; Nara Figueroa-Bossi; Lionello Bossi
Journal:  Curr Opin Microbiol       Date:  2013-01-21       Impact factor: 7.934

Review 7.  Attenuation in the control of expression of bacterial operons.

Authors:  C Yanofsky
Journal:  Nature       Date:  1981-02-26       Impact factor: 49.962

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Authors:  P I Fields; R V Swanson; C G Haidaris; F Heffron
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

Review 9.  Rho-dependent transcription termination: more questions than answers.

Authors:  Sharmistha Banerjee; Jisha Chalissery; Irfan Bandey; Ranjan Sen
Journal:  J Microbiol       Date:  2006-02       Impact factor: 3.422

10.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

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  12 in total

Review 1.  Regulation of Bacterial Gene Expression by Transcription Attenuation.

Authors:  Charles L Turnbough
Journal:  Microbiol Mol Biol Rev       Date:  2019-07-03       Impact factor: 11.056

Review 2.  Mastering the control of the Rho transcription factor for biotechnological applications.

Authors:  Tomás G Villa; Ana G Abril; Angeles Sánchez-Pérez
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-08       Impact factor: 4.813

Review 3.  Learning from the Leaders: Gene Regulation by the Transcription Termination Factor Rho.

Authors:  Michelle A Kriner; Anastasia Sevostyanova; Eduardo A Groisman
Journal:  Trends Biochem Sci       Date:  2016-06-17       Impact factor: 13.807

4.  A scalable framework for the discovery of functional helicase substrates and helicase-driven regulatory switches.

Authors:  Mildred Delaleau; Eric Eveno; Isabelle Simon; Annie Schwartz; Marc Boudvillain
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-12       Impact factor: 12.779

5.  Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping.

Authors:  Philip P Adams; Gabriele Baniulyte; Caroline Esnault; Kavya Chegireddy; Navjot Singh; Molly Monge; Ryan K Dale; Gisela Storz; Joseph T Wade
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6.  High yields and soluble expression of superoxide dismutases in Escherichia coli due to the HIV-1 Tat peptide via increases in mRNA transcription.

Authors:  Yangdong Sun; Qiao Ye; Min Wu; Yonghong Wu; Chenggang Zhang; Weiqun Yan
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7.  RNA secondary structures regulate three steps of Rho-dependent transcription termination within a bacterial mRNA leader.

Authors:  Michelle A Kriner; Eduardo A Groisman
Journal:  Nucleic Acids Res       Date:  2016-10-05       Impact factor: 16.971

8.  Changes in Transcriptome of Yersinia pseudotuberculosis IP32953 Grown at 3 and 28°C Detected by RNA Sequencing Shed Light on Cold Adaptation.

Authors:  Jussa-Pekka Virtanen; Riikka Keto-Timonen; Kaisa Jaakkola; Noora Salin; Hannu Korkeala
Journal:  Front Cell Infect Microbiol       Date:  2018-11-27       Impact factor: 5.293

9.  Genome-wide relationship between R-loop formation and antisense transcription in Escherichia coli.

Authors:  Nalini Raghunathan; Rajvardhan M Kapshikar; Jakku K Leela; Jillella Mallikarjun; Philippe Bouloc; Jayaraman Gowrishankar
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10.  A multivariate prediction model for Rho-dependent termination of transcription.

Authors:  Cédric Nadiras; Eric Eveno; Annie Schwartz; Nara Figueroa-Bossi; Marc Boudvillain
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

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