Literature DB >> 26513781

Histopathological Image Classification Using Discriminative Feature-Oriented Dictionary Learning.

Tiep Huu Vu, Hojjat Seyed Mousavi, Vishal Monga, Ganesh Rao, U K Arvind Rao.   

Abstract

In histopathological image analysis, feature extraction for classification is a challenging task due to the diversity of histology features suitable for each problem as well as presence of rich geometrical structures. In this paper, we propose an automatic feature discovery framework via learning class-specific dictionaries and present a low-complexity method for classification and disease grading in histopathology. Essentially, our Discriminative Feature-oriented Dictionary Learning (DFDL) method learns class-specific dictionaries such that under a sparsity constraint, the learned dictionaries allow representing a new image sample parsimoniously via the dictionary corresponding to the class identity of the sample. At the same time, the dictionary is designed to be poorly capable of representing samples from other classes. Experiments on three challenging real-world image databases: 1) histopathological images of intraductal breast lesions, 2) mammalian kidney, lung and spleen images provided by the Animal Diagnostics Lab (ADL) at Pennsylvania State University, and 3) brain tumor images from The Cancer Genome Atlas (TCGA) database, reveal the merits of our proposal over state-of-the-art alternatives. Moreover, we demonstrate that DFDL exhibits a more graceful decay in classification accuracy against the number of training images which is highly desirable in practice where generous training is often not available.

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Mesh:

Year:  2015        PMID: 26513781      PMCID: PMC4807738          DOI: 10.1109/TMI.2015.2493530

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  19 in total

1.  Graph run-length matrices for histopathological image segmentation.

Authors:  Akif Burak Tosun; Cigdem Gunduz-Demir
Journal:  IEEE Trans Med Imaging       Date:  2010-11-22       Impact factor: 10.048

2.  Offset-sparsity decomposition for automated enhancement of color microscopic image of stained specimen in histopathology.

Authors:  Ivica Kopriva; Marijana Popovic Hadžija; Mirko Hadžija; Gorana Aralica
Journal:  J Biomed Opt       Date:  2015-07       Impact factor: 3.170

3.  Support vector machines for histogram-based image classification.

Authors:  O Chapelle; P Haffner; V N Vapnik
Journal:  IEEE Trans Neural Netw       Date:  1999

4.  WND-CHARM: Multi-purpose image classification using compound image transforms.

Authors:  Nikita Orlov; Lior Shamir; Tomasz Macura; Josiah Johnston; D Mark Eckley; Ilya G Goldberg
Journal:  Pattern Recognit Lett       Date:  2008-01       Impact factor: 3.756

5.  Locality-constrained Subcluster Representation Ensemble for lung image classification.

Authors:  Yang Song; Weidong Cai; Heng Huang; Yun Zhou; Yue Wang; David Dagan Feng
Journal:  Med Image Anal       Date:  2015-03-24       Impact factor: 8.545

6.  Simultaneous sparsity model for histopathological image representation and classification.

Authors:  Umamahesh Srinivas; Hojjat Seyed Mousavi; Vishal Monga; Arthur Hattel; Bhushan Jayarao
Journal:  IEEE Trans Med Imaging       Date:  2014-05       Impact factor: 10.048

7.  Characterization of tissue histopathology via predictive sparse decomposition and spatial pyramid matching.

Authors:  Hang Chang; Nandita Nayak; Paul T Spellman; Bahram Parvin
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

8.  Robust face recognition via sparse representation.

Authors:  John Wright; Allen Y Yang; Arvind Ganesh; S Shankar Sastry; Yi Ma
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2009-02       Impact factor: 6.226

9.  Wndchrm - an open source utility for biological image analysis.

Authors:  Lior Shamir; Nikita Orlov; D Mark Eckley; Tomasz Macura; Josiah Johnston; Ilya G Goldberg
Journal:  Source Code Biol Med       Date:  2008-07-08

10.  Automated discrimination of lower and higher grade gliomas based on histopathological image analysis.

Authors:  Hojjat Seyed Mousavi; Vishal Monga; Ganesh Rao; Arvind U K Rao
Journal:  J Pathol Inform       Date:  2015-03-24
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  10 in total

1.  Interactive thyroid whole slide image diagnostic system using deep representation.

Authors:  Pingjun Chen; Xiaoshuang Shi; Yun Liang; Yuan Li; Lin Yang; Paul D Gader
Journal:  Comput Methods Programs Biomed       Date:  2020-06-27       Impact factor: 5.428

2.  Patch-based Convolutional Neural Network for Whole Slide Tissue Image Classification.

Authors:  Le Hou; Dimitris Samaras; Tahsin M Kurc; Yi Gao; James E Davis; Joel H Saltz
Journal:  Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit       Date:  2016 Jun-Jul

3.  Learning Based Segmentation of CT Brain Images: Application to Postoperative Hydrocephalic Scans.

Authors:  Venkateswararao Cherukuri; Peter Ssenyonga; Benjamin C Warf; Abhaya V Kulkarni; Vishal Monga; Steven J Schiff
Journal:  IEEE Trans Biomed Eng       Date:  2017-12-13       Impact factor: 4.538

4.  A Novel Attribute-Based Symmetric Multiple Instance Learning for Histopathological Image Analysis.

Authors:  Trung Vu; Phung Lai; Raviv Raich; Anh Pham; Xiaoli Z Fern; Uk Arvind Rao
Journal:  IEEE Trans Med Imaging       Date:  2020-04-14       Impact factor: 10.048

5.  Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors.

Authors:  Yang Song; Weidong Cai; Heng Huang; Dagan Feng; Yue Wang; Mei Chen
Journal:  BMC Bioinformatics       Date:  2016-11-16       Impact factor: 3.169

6.  Multiscale High-Level Feature Fusion for Histopathological Image Classification.

Authors:  ZhiFei Lai; HuiFang Deng
Journal:  Comput Math Methods Med       Date:  2017-12-31       Impact factor: 2.238

7.  NHL Pathological Image Classification Based on Hierarchical Local Information and GoogLeNet-Based Representations.

Authors:  Jie Bai; Huiyan Jiang; Siqi Li; Xiaoqi Ma
Journal:  Biomed Res Int       Date:  2019-03-21       Impact factor: 3.411

Review 8.  Precise hepatectomy in the intelligent digital era.

Authors:  Hao Chen; Yuchen He; Weidong Jia
Journal:  Int J Biol Sci       Date:  2020-01-01       Impact factor: 6.580

9.  Image analysis with deep learning to predict breast cancer grade, ER status, histologic subtype, and intrinsic subtype.

Authors:  Heather D Couture; Lindsay A Williams; Joseph Geradts; Sarah J Nyante; Ebonee N Butler; J S Marron; Charles M Perou; Melissa A Troester; Marc Niethammer
Journal:  NPJ Breast Cancer       Date:  2018-09-03

10.  Deep Learning for Whole-Slide Tissue Histopathology Classification: A Comparative Study in the Identification of Dysplastic and Non-Dysplastic Barrett's Esophagus.

Authors:  Rasoul Sali; Nazanin Moradinasab; Shan Guleria; Lubaina Ehsan; Philip Fernandes; Tilak U Shah; Sana Syed; Donald E Brown
Journal:  J Pers Med       Date:  2020-09-23
  10 in total

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