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Literature DB >> 26513548

BrowserGenome.org: web-based RNA-seq data analysis and visualization.

Jonathan L Schmid-Burgk¹, Veit Hornung¹.

Abstract

Mesh：

Substances：
RNA

Year: 2015 PMID： 26513548 DOI： 10.1038/nmeth.3615

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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5 in total

1. JBrowse: a next-generation genome browser.

Authors: Mitchell E Skinner; Andrew V Uzilov; Lincoln D Stein; Christopher J Mungall; Ian H Holmes
Journal: Genome Res Date: 2009-07-01 Impact factor: 9.043

2. bam.iobio: a web-based, real-time, sequence alignment file inspector.

Authors: Chase A Miller; Yi Qiao; Tonya DiSera; Brian D'Astous; Gabor T Marth
Journal: Nat Methods Date: 2014-12 Impact factor: 28.547

3. STAR: ultrafast universal RNA-seq aligner.

Authors: Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal: Bioinformatics Date: 2012-10-25 Impact factor: 6.937

4. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors: Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal: Genome Biol Date: 2009-03-04 Impact factor: 13.583

5. An integrated encyclopedia of DNA elements in the human genome.

Authors:
Journal: Nature Date: 2012-09-06 Impact factor: 49.962

5 in total

4 in total

BrowserGenome.org: web-based RNA-seq data analysis and visualization.

1. JBrowse: a next-generation genome browser.

2. bam.iobio: a web-based, real-time, sequence alignment file inspector.

3. STAR: ultrafast universal RNA-seq aligner.

4. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

5. An integrated encyclopedia of DNA elements in the human genome.

1. The START App: a web-based RNAseq analysis and visualization resource.

2. Highly Parallel Profiling of Cas9 Variant Specificity.

3. JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures.

4. Engineering of CRISPR-Cas12b for human genome editing.