Literature DB >> 25423016

bam.iobio: a web-based, real-time, sequence alignment file inspector.

Chase A Miller1, Yi Qiao1, Tonya DiSera2, Brian D'Astous3, Gabor T Marth1.   

Abstract

Entities:  

Mesh：

Year:  2014        PMID： 25423016      PMCID： PMC4282680          DOI： 10.1038/nmeth.3174

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  2 in total

1.  BamTools: a C++ API and toolkit for analyzing and managing BAM files.

Authors:  Derek W Barnett; Erik K Garrison; Aaron R Quinlan; Michael P Strömberg; Gabor T Marth
Journal:  Bioinformatics       Date:  2011-04-14       Impact factor: 6.937

2.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937
  2 in total
  21 in total

1.  BrowserGenome.org: web-based RNA-seq data analysis and visualization.

Authors:  Jonathan L Schmid-Burgk; Veit Hornung
Journal:  Nat Methods       Date:  2015-11       Impact factor: 28.547

2.  Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel.

Authors:  Erin H Graf; Keith E Simmon; Keith D Tardif; Weston Hymas; Steven Flygare; Karen Eilbeck; Mark Yandell; Robert Schlaberg
Journal:  J Clin Microbiol       Date:  2016-01-27       Impact factor: 5.948

Review 3.  Settling the score: variant prioritization and Mendelian disease.

Authors:  Karen Eilbeck; Aaron Quinlan; Mark Yandell
Journal:  Nat Rev Genet       Date:  2017-08-14       Impact factor: 53.242

Review 4.  A Primer on Infectious Disease Bacterial Genomics.

Authors:  Tarah Lynch; Aaron Petkau; Natalie Knox; Morag Graham; Gary Van Domselaar
Journal:  Clin Microbiol Rev       Date:  2016-09-07       Impact factor: 26.132

5.  Pan-cancer analysis of whole genomes.

Authors: 
Journal:  Nature       Date:  2020-02-05       Impact factor: 49.962

6.  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.

Authors:  Enis Afgan; Dannon Baker; Marius van den Beek; Daniel Blankenberg; Dave Bouvier; Martin Čech; John Chilton; Dave Clements; Nate Coraor; Carl Eberhard; Björn Grüning; Aysam Guerler; Jennifer Hillman-Jackson; Greg Von Kuster; Eric Rasche; Nicola Soranzo; Nitesh Turaga; James Taylor; Anton Nekrutenko; Jeremy Goecks
Journal:  Nucleic Acids Res       Date:  2016-05-02       Impact factor: 16.971

7.  An architecture for genomics analysis in a clinical setting using Galaxy and Docker.

Authors:  W Digan; H Countouris; M Barritault; D Baudoin; P Laurent-Puig; H Blons; A Burgun; B Rance
Journal:  Gigascience       Date:  2017-11-01       Impact factor: 6.524

8.  Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling.

Authors:  Steven Flygare; Keith Simmon; Chase Miller; Yi Qiao; Brett Kennedy; Tonya Di Sera; Erin H Graf; Keith D Tardif; Aurélie Kapusta; Shawn Rynearson; Chris Stockmann; Krista Queen; Suxiang Tong; Karl V Voelkerding; Anne Blaschke; Carrie L Byington; Seema Jain; Andrew Pavia; Krow Ampofo; Karen Eilbeck; Gabor Marth; Mark Yandell; Robert Schlaberg
Journal:  Genome Biol       Date:  2016-05-26       Impact factor: 13.583

9.  Gigwa-Genotype investigator for genome-wide analyses.

Authors:  Guilhem Sempéré; Florian Philippe; Alexis Dereeper; Manuel Ruiz; Gautier Sarah; Pierre Larmande
Journal:  Gigascience       Date:  2016-06-06       Impact factor: 6.524

10.  Reference genotype and exome data from an Australian Aboriginal population for health-based research.

Authors:  Dave Tang; Denise Anderson; Richard W Francis; Genevieve Syn; Sarra E Jamieson; Timo Lassmann; Jenefer M Blackwell
Journal:  Sci Data       Date:  2016-04-12       Impact factor: 6.444
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