Literature DB >> 15893668

Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum.

Huiying Li1, Michael R Sawaya, F Robert Tabita, David Eisenberg.   

Abstract

Ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) catalyzes the incorporation of atmospheric CO(2) into ribulose 1,5-bisphosphate (RuBP). RuBisCOs are classified into four forms based on sequence similarity: forms I, II and III are bona fide RuBisCOs; form IV, also called the RuBisCO-like protein (RLP), lacks several of the substrate binding and catalytic residues and does not catalyze RuBP-dependent CO(2) fixation in vitro. To contribute to understanding the function of RLPs, we determined the crystal structure of the RLP from Chlorobium tepidum. The overall structure of the RLP is similar to the structures of the three other forms of RuBisCO; however, the active site is distinct from those of bona fide RuBisCOs and suggests that the RLP is possibly capable of catalyzing enolization but not carboxylation. Bioinformatic analysis of the protein functional linkages suggests that this RLP coevolved with enzymes of the bacteriochlorophyll biosynthesis pathway and may be involved in processes related to photosynthesis.

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Year:  2005        PMID: 15893668     DOI: 10.1016/j.str.2005.02.017

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  17 in total

1.  Composition of archaeal, bacterial, and eukaryal RuBisCO genotypes in three Western Pacific arc hydrothermal vent systems.

Authors:  Hosam Easa Elsaied; Hiroyuki Kimura; Takeshi Naganuma
Journal:  Extremophiles       Date:  2006-10-06       Impact factor: 2.395

2.  The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism.

Authors:  Wesley D Swingley; Sumedha Sadekar; Stephen D Mastrian; Heather J Matthies; Jicheng Hao; Hector Ramos; Chaitanya R Acharya; Amber L Conrad; Heather L Taylor; Liza C Dejesa; Maulik K Shah; Maeve E O'huallachain; Michael T Lince; Robert E Blankenship; J Thomas Beatty; Jeffrey W Touchman
Journal:  J Bacteriol       Date:  2006-11-10       Impact factor: 3.490

Review 3.  Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs.

Authors:  F Robert Tabita; Thomas E Hanson; Huiying Li; Sriram Satagopan; Jaya Singh; Sum Chan
Journal:  Microbiol Mol Biol Rev       Date:  2007-12       Impact factor: 11.056

4.  Crystallization and preliminary X-ray analysis of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis.

Authors:  Haruka Tamura; Hiroki Ashida; Shogo Koga; Yohtaro Saito; Tomonori Yadani; Yasushi Kai; Tsuyoshi Inoue; Akiho Yokota; Hiroyoshi Matsumura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-31

Review 5.  Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms.

Authors:  F Robert Tabita; Thomas E Hanson; Sriram Satagopan; Brian H Witte; Nathan E Kreel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2008-08-27       Impact factor: 6.237

6.  Mechanistic diversity in the RuBisCO superfamily: RuBisCO from Rhodospirillum rubrum is not promiscuous for reactions catalyzed by RuBisCO-like proteins.

Authors:  Benjamin P E Warlick; Heidi J Imker; Jaya Sriram; F Robert Tabita; John A Gerlt
Journal:  Biochemistry       Date:  2012-11-14       Impact factor: 3.162

7.  In Vivo Studies in Rhodospirillum rubrum Indicate That Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (Rubisco) Catalyzes Two Obligatorily Required and Physiologically Significant Reactions for Distinct Carbon and Sulfur Metabolic Pathways.

Authors:  Swati Dey; Justin A North; Jaya Sriram; Bradley S Evans; F Robert Tabita
Journal:  J Biol Chem       Date:  2015-10-28       Impact factor: 5.157

8.  The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

Authors:  Shibu Yooseph; Granger Sutton; Douglas B Rusch; Aaron L Halpern; Shannon J Williamson; Karin Remington; Jonathan A Eisen; Karla B Heidelberg; Gerard Manning; Weizhong Li; Lukasz Jaroszewski; Piotr Cieplak; Christopher S Miller; Huiying Li; Susan T Mashiyama; Marcin P Joachimiak; Christopher van Belle; John-Marc Chandonia; David A Soergel; Yufeng Zhai; Kannan Natarajan; Shaun Lee; Benjamin J Raphael; Vineet Bafna; Robert Friedman; Steven E Brenner; Adam Godzik; David Eisenberg; Jack E Dixon; Susan S Taylor; Robert L Strausberg; Marvin Frazier; J Craig Venter
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

9.  Mechanistic diversity in the RuBisCO superfamily: a novel isomerization reaction catalyzed by the RuBisCO-like protein from Rhodospirillum rubrum.

Authors:  Heidi J Imker; Jaya Singh; Benjamin P Warlick; F Robert Tabita; John A Gerlt
Journal:  Biochemistry       Date:  2008-10-01       Impact factor: 3.162

10.  Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1.

Authors:  Gregory J Dick; Sheila Podell; Hope A Johnson; Yadira Rivera-Espinoza; Rizlan Bernier-Latmani; James K McCarthy; Justin W Torpey; Brian G Clement; Terry Gaasterland; Bradley M Tebo
Journal:  Appl Environ Microbiol       Date:  2008-03-14       Impact factor: 4.792

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