Literature DB >> 26505259

DAMQT 2.1.0: A new version of the DAMQT package enabled with the topographical analysis of electron density and electrostatic potential in molecules.

Anmol Kumar1, Sachin D Yeole1, Shridhar R Gadre1, Rafael López2, Jaime F Rico2, Guillermo Ramírez2, Ignacio Ema2, David Zorrilla3.   

Abstract

DAMQT-2.1.0 is a new version of DAMQT package which includes topographical analysis of molecular electron density (MED) and molecular electrostatic potential (MESP), such as mapping of critical points (CPs), creating molecular graphs, and atomic basins. Mapping of CPs is assisted with algorithmic determination of Euler characteristic in order to provide a necessary condition for locating all possible CPs. Apart from the mapping of CPs and determination of molecular graphs, the construction of MESP-based atomic basin is a new and exclusive feature introduced in DAMQT-2.1.0. The GUI in DAMQT provides a user-friendly interface to run the code and visualize the final outputs. MPI libraries have been implemented for all the tasks to develop the parallel version of the software. Almost linear scaling of computational time is achieved with the increasing number of processors while performing various aspects of topography. A brief discussion of molecular graph and atomic basin is provided in the current article highlighting their chemical importance. Appropriate example sets have been presented for demonstrating the functions and efficiency of the code.
© 2015 Wiley Periodicals, Inc.

Entities:  

Keywords:  DAMQT; MESP-based topograph; atomic basins; critical point (CP); deformed atoms in molecules; molecular electron density (MED); molecular electrostatic potential (MESP); molecular graph; topography

Mesh:

Year:  2015        PMID: 26505259     DOI: 10.1002/jcc.24212

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  4 in total

1.  Nucleophilicities of Lewis Bases B and Electrophilicities of Lewis Acids A Determined from the Dissociation Energies of Complexes B⋯A Involving Hydrogen Bonds, Tetrel Bonds, Pnictogen Bonds, Chalcogen Bonds and Halogen Bonds.

Authors:  Ibon Alkorta; Anthony C Legon
Journal:  Molecules       Date:  2017-10-23       Impact factor: 4.411

2.  Halogen Bonding Involving CO and CS with Carbon as the Electron Donor.

Authors:  Janet E Del Bene; Ibon Alkorta; José Elguero
Journal:  Molecules       Date:  2017-11-12       Impact factor: 4.411

3.  The electrostatic potential of dynamic charge densities.

Authors:  Christian B Hübschle; Sander van Smaalen
Journal:  J Appl Crystallogr       Date:  2017-10-20       Impact factor: 3.304

4.  Complexes Between Adamantane Analogues B4X6 -X = {CH2, NH, O ; SiH2, PH, S} - and Dihydrogen, B4X6:nH2 (n = 1-4).

Authors:  Josep M Oliva-Enrich; Ibon Alkorta; José Elguero
Journal:  Molecules       Date:  2020-02-26       Impact factor: 4.411

  4 in total

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