| Literature DB >> 26501313 |
Jamie Royle1, Samuel John Dobson2, Marietta Müller3, Andrew Macdonald4.
Abstract
Studies have highlighted the essential nature of a group of small, highly hydrophobic, membrane embedded, channel-forming proteins in the life cycles of a growing number of RNA viruses. These viroporins mediate the flow of ions and a range of solutes across cellular membranes and are necessary for manipulating a myriad of host processes. As such they contribute to all stages of the virus life cycle. Recent discoveries have identified proteins encoded by the small DNA tumor viruses that display a number of viroporin like properties. This review article summarizes the recent developments in our understanding of these novel viroporins; describes their roles in the virus life cycles and in pathogenesis and speculates on their potential as targets for anti-viral therapeutic intervention.Entities:
Keywords: DNA virus; papillomavirus; polyomavirus; viroporin
Mesh:
Substances:
Year: 2015 PMID: 26501313 PMCID: PMC4632388 DOI: 10.3390/v7102880
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.048
Known JC agnoprotein binding partners [44]. Function and region of interaction are stated if known.
| Host Encoded Interacting Partner | Function | Region of Agnoprotein Required for The Interaction |
|---|---|---|
| AP-3 (δ subunit) | Modulates vesicle trafficking, prevents agnoprotein degradation | Residues 1–12 |
| PP2A | Dephosphorylation of JC agnoprotein | Residues 18–36 |
| FEZ1 | Facilitates virus release | Unknown |
| Tubulin | Unknown | Unknown |
| HP-1α | Nuclear egress of JC virions | N-terminus |
| p52 | Unknown | Unknown |
| p53 | Modulation of the cell cycle | N-terminus |
| p103 | Unknown | Unknown |
| p112 | Unknown | Unknown |
| p158 | Unknown | Unknown |
| Ku70 | Host cell DNA repair | N-terminus |
| YB-1 | Altered host gene expression | Residues 18–36 |
| JC T-antigen | Repression of JC transcription and DNA replication | N-terminus |
| JC t-antigen | Disruption of the PP2A – t-antigen interaction | N-terminus |
| HIV-1 Tat | Inhibition of HIV1 gene expression | Residues 18–54 |
Figure 1Sequence conservation of BK, JC and SV40 agnoproteins. Residues are displayed using amino acid single letter codes. Conserved residues are shown in red through to unconserved residues in blue. * represents a residue conserved across all three sequences. Uniprot sequences P03085 (BK), P03086 (JC) and P03084 (SV40) were used. The sequence alignment was generated using the online PRALINE multiple sequence alignment tool (http://www.ibi.vu.nl/programs/pralinewww/).
Figure 2HPV16 E5 is a 3 TMD viroporin. (A) HPV16 E5 is predicted to have three transmembrane domains (TMDs; boxes) based on the hydrophobic nature of its amino acids. Membrane permeabilization assays demonstrate that the carboxyl-terminus extends into the cytosol while the amino-terminus is directed towards the endoplasmic reticulum (ER) lumen. The first TMD gives rise to the subcellular localization of E5 and mediates binding to MHC class I molecules and Calnexin. The second TMD facilitates the recently identified interaction with the transmembrane protein YIPF4 as well as the 16K subunit of the H+-ATPase. Further functions of E5 such as the increase of koilocytosis, activation of EGFR signaling and induction of endosome alkalinization are exerted via the third TMD; (B) The sequence of HPV16 E5 was obtained from Uniprot and the secondary structure predicted using PSIPRED and MEMSAT-3 and energy minimized. The model for an E5 monomer contained three TMD and had the lowest energy and was used to build a hexameric model using the protocol described previously [81]. Each monomer in the model was minimized individually to restore the symmetry and was refined using prime2 (Schrodinger Inc). The oligomeric state of HPV16 E5 was confirmed by native PAGE and transmission electron microscopy [3].