Literature DB >> 26482880

A genome-wide association study confirms PNPLA3 and identifies TM6SF2 and MBOAT7 as risk loci for alcohol-related cirrhosis.

Stephan Buch1, Felix Stickel2, Eric Trépo3,4, Michael Way5,6, Alexander Herrmann1, Hans Dieter Nischalke7, Mario Brosch1, Jonas Rosendahl8, Thomas Berg8, Monika Ridinger9,10, Marcella Rietschel11, Andrew McQuillin6, Josef Frank11, Falk Kiefer11, Stefan Schreiber12, Wolfgang Lieb13, Michael Soyka14, Nasser Semmo15, Elmar Aigner16, Christian Datz16, Renate Schmelz1, Stefan Brückner1, Sebastian Zeissig1, Anna-Magdalena Stephan1, Norbert Wodarz9, Jacques Devière3,4, Nicolas Clumeck17, Christoph Sarrazin18, Frank Lammert19, Thierry Gustot3,4, Pierre Deltenre3,20,21, Henry Völzke22, Markus M Lerch23, Julia Mayerle23, Florian Eyer24, Clemens Schafmayer25, Sven Cichon26, Markus M Nöthen27,28, Michael Nothnagel29, David Ellinghaus30, Klaus Huse31, Andre Franke30, Steffen Zopf32, Claus Hellerbrand33, Christophe Moreno3,4, Denis Franchimont3,4, Marsha Y Morgan5, Jochen Hampe1.   

Abstract

Alcohol misuse is the leading cause of cirrhosis and the second most common indication for liver transplantation in the Western world. We performed a genome-wide association study for alcohol-related cirrhosis in individuals of European descent (712 cases and 1,426 controls) with subsequent validation in two independent European cohorts (1,148 cases and 922 controls). We identified variants in the MBOAT7 (P = 1.03 × 10(-9)) and TM6SF2 (P = 7.89 × 10(-10)) genes as new risk loci and confirmed rs738409 in PNPLA3 as an important risk locus for alcohol-related cirrhosis (P = 1.54 × 10(-48)) at a genome-wide level of significance. These three loci have a role in lipid processing, suggesting that lipid turnover is important in the pathogenesis of alcohol-related cirrhosis.

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Year:  2015        PMID: 26482880     DOI: 10.1038/ng.3417

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  49 in total

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2.  Principal components analysis corrects for stratification in genome-wide association studies.

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3.  Integrating GWASs and human protein interaction networks identifies a gene subnetwork underlying alcohol dependence.

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4.  fcGENE: a versatile tool for processing and transforming SNP datasets.

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Journal:  PLoS One       Date:  2014-07-22       Impact factor: 3.240

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6.  Genome-wide association analysis in primary sclerosing cholangitis identifies two non-HLA susceptibility loci.

Authors:  Espen Melum; Andre Franke; Christoph Schramm; Tobias J Weismüller; Daniel Nils Gotthardt; Felix A Offner; Brian D Juran; Jon K Laerdahl; Verena Labi; Einar Björnsson; Rinse K Weersma; Liesbet Henckaerts; Andreas Teufel; Christian Rust; Eva Ellinghaus; Tobias Balschun; Kirsten Muri Boberg; David Ellinghaus; Annika Bergquist; Peter Sauer; Euijung Ryu; Johannes Roksund Hov; Jochen Wedemeyer; Björn Lindkvist; Michael Wittig; Robert J Porte; Kristian Holm; Christian Gieger; H-Erich Wichmann; Pieter Stokkers; Cyriel Y Ponsioen; Heiko Runz; Adolf Stiehl; Cisca Wijmenga; Martina Sterneck; Severine Vermeire; Ulrich Beuers; Andreas Villunger; Erik Schrumpf; Konstantinos N Lazaridis; Michael P Manns; Stefan Schreiber; Tom H Karlsen
Journal:  Nat Genet       Date:  2010-12-12       Impact factor: 38.330

7.  Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.

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Journal:  Gastroenterology       Date:  2012-07-27       Impact factor: 22.682

8.  Assessment of asymptomatic liver fibrosis in alcoholic patients using fibroscan: prospective comparison with seven non-invasive laboratory tests.

Authors:  E Nguyen-Khac; D Chatelain; B Tramier; C Decrombecque; B Robert; J-P Joly; M Brevet; P Grignon; S Lion; L Le Page; J-L Dupas
Journal:  Aliment Pharmacol Ther       Date:  2008-08-14       Impact factor: 8.171

9.  The L-α-lysophosphatidylinositol/GPR55 system and its potential role in human obesity.

Authors:  José María Moreno-Navarrete; Victoria Catalán; Lauren Whyte; Adenis Díaz-Arteaga; Rafael Vázquez-Martínez; Fernando Rotellar; Rocío Guzmán; Javier Gómez-Ambrosi; Marina R Pulido; Wendy R Russell; Mónica Imbernón; Ruth A Ross; María M Malagón; Carlos Dieguez; José Manuel Fernández-Real; Gema Frühbeck; Ruben Nogueiras
Journal:  Diabetes       Date:  2011-12-16       Impact factor: 9.461

10.  Pnpla3I148M knockin mice accumulate PNPLA3 on lipid droplets and develop hepatic steatosis.

Authors:  Eriks Smagris; Soumik BasuRay; John Li; Yongcheng Huang; Ka-man V Lai; Jesper Gromada; Jonathan C Cohen; Helen H Hobbs
Journal:  Hepatology       Date:  2014-10-01       Impact factor: 17.425

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  157 in total

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Journal:  Scand J Gastroenterol       Date:  2017-08-04       Impact factor: 2.423

2.  Liver: New genetic insights into the development of alcohol-related cirrhosis.

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3.  Independent and additive effects of PNPLA3 and TM6SF2 polymorphisms on the development of non-B, non-C hepatocellular carcinoma.

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4.  Alcoholic Liver Disease in Asia, Europe, and North America.

Authors:  Suthat Liangpunsakul; Paul Haber; Geoffrey W McCaughan
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5.  Single-nucleotide rs738409 polymorphisms in the PNPLA3 gene are strongly associated with alcoholic liver disease in Han Chinese males.

Authors:  Yanfang Zhang; Tongsheng Guo; Funing Yang; Yuanli Mao; Liubing Li; Chenxi Liu; Qiang Sun; Yongzhe Li; Jing Huang
Journal:  Hepatol Int       Date:  2018-08-21       Impact factor: 6.047

Review 6.  Alcohol effects on hepatic lipid metabolism.

Authors:  Sookyoung Jeon; Rotonya Carr
Journal:  J Lipid Res       Date:  2020-02-06       Impact factor: 5.922

7.  Association of fetuin B with markers of liver fibrosis in nonalcoholic fatty liver disease.

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Journal:  Endocrine       Date:  2017-09-15       Impact factor: 3.633

8.  Effects of Age, Sex, Body Weight, and Quantity of Alcohol Consumption on Occurrence and Severity of Alcoholic Hepatitis.

Authors:  Suthat Liangpunsakul; Puneet Puri; Vijay H Shah; Patrick Kamath; Arun Sanyal; Thomas Urban; Xiaowei Ren; Barry Katz; Svetlana Radaeva; Naga Chalasani; David W Crabb
Journal:  Clin Gastroenterol Hepatol       Date:  2016-06-15       Impact factor: 11.382

Review 9.  Mechanisms, biomarkers and targets for therapy in alcohol-associated liver injury: From Genetics to nutrition: Summary of the ISBRA 2018 symposium.

Authors:  Irina A Kirpich; Dennis R Warner; Wenke Feng; Swati Joshi-Barve; Craig J McClain; Devanshi Seth; Wei Zhong; Zhanxiang Zhou; Natalia A Osna; Kusum K Kharbanda
Journal:  Alcohol       Date:  2019-05-23       Impact factor: 2.405

10.  Binge alcohol alters PNPLA3 levels in liver through epigenetic mechanism involving histone H3 acetylation.

Authors:  Ricardo J Restrepo; Robert W Lim; Ronald J Korthuis; Shivendra D Shukla
Journal:  Alcohol       Date:  2017-03-12       Impact factor: 2.405

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