Literature DB >> 26477248

Exploring Structure, Dynamics, and Topology of Nitroxide Spin-Labeled Proteins Using Continuous-Wave Electron Paramagnetic Resonance Spectroscopy.

Christian Altenbach1, Carlos J López1, Kálmán Hideg2, Wayne L Hubbell3.   

Abstract

Structural and dynamical characterization of proteins is of central importance in understanding the mechanisms underlying their biological functions. Site-directed spin labeling (SDSL) combined with continuous-wave electron paramagnetic resonance (CW EPR) spectroscopy has shown the capability of providing this information with site-specific resolution under physiological conditions for proteins of any degree of complexity, including those associated with membranes. This chapter introduces methods commonly employed for SDSL and describes selected CW EPR-based methods that can be applied to (1) map secondary and tertiary protein structure, (2) determine membrane protein topology, (3) measure protein backbone flexibility, and (4) reveal the existence of conformational exchange at equilibrium.
© 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CW EPR; Distance measurements; EPR lineshape analysis; Nitroxide scanning; Protein dynamics; Protein structure; Site-directed spin labeling; Solvent accessibility; Spin interaction

Mesh:

Substances:

Year:  2015        PMID: 26477248     DOI: 10.1016/bs.mie.2015.08.006

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  16 in total

1.  Probing initial transient oligomerization events facilitating Huntingtin fibril nucleation at atomic resolution by relaxation-based NMR.

Authors:  Samuel A Kotler; Vitali Tugarinov; Thomas Schmidt; Alberto Ceccon; David S Libich; Rodolfo Ghirlando; Charles D Schwieters; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-11       Impact factor: 11.205

2.  Insights on the Structure, Molecular Weight and Activity of an Antibacterial Protein-Polymer Hybrid.

Authors:  Yanxiong Pan; Sunanda Neupane; Jasmin Farmakes; Myungkeun Oh; Kylie Bentz; Yongki Choi; Zhongyu Yang
Journal:  Chemphyschem       Date:  2018-02-01       Impact factor: 3.102

Review 3.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

4.  Electron spin-labelling of the EutC subunit in B12-dependent ethanolamine ammonia-lyase reveals dynamics and a two-state conformational equilibrium in the N-terminal, signal-sequence-associated domain.

Authors:  Benjamen Nforneh; Adonis M Bovell; Kurt Warncke
Journal:  Free Radic Res       Date:  2017-12-18

5.  Completion of the Vimentin Rod Domain Structure Using Experimental Restraints: A New Tool for Exploring Intermediate Filament Assembly and Mutations.

Authors:  David D Gae; Madhu S Budamagunta; John F Hess; Robert M McCarrick; Gary A Lorigan; Paul G FitzGerald; John C Voss
Journal:  Structure       Date:  2019-08-08       Impact factor: 5.006

Review 6.  Membrane remodeling by amyloidogenic and non-amyloidogenic proteins studied by EPR.

Authors:  Jobin Varkey; Ralf Langen
Journal:  J Magn Reson       Date:  2017-07       Impact factor: 2.229

7.  Nucleic Acid-Dependent Conformational Changes in CRISPR-Cas9 Revealed by Site-Directed Spin Labeling.

Authors:  Carolina Vazquez Reyes; Narin S Tangprasertchai; S D Yogesha; Richard H Nguyen; Xiaojun Zhang; Rakhi Rajan; Peter Z Qin
Journal:  Cell Biochem Biophys       Date:  2016-06-24       Impact factor: 2.194

8.  High-pressure EPR spectroscopy studies of the E. coli lipopolysaccharide transport proteins LptA and LptC.

Authors:  Kathryn M Schultz; Candice S Klug
Journal:  Appl Magn Reson       Date:  2017-09-21       Impact factor: 0.831

9.  Conformational Changes and Membrane Interaction of the Bacterial Phospholipase, ExoU: Characterization by Site-Directed Spin Labeling.

Authors:  Jimmy B Feix; Samantha Kohn; Maxx H Tessmer; David M Anderson; Dara W Frank
Journal:  Cell Biochem Biophys       Date:  2018-07-25       Impact factor: 2.194

10.  Interactions of the effector ExoU from Pseudomonas aeruginosa with short-chain phosphatidylinositides provide insights into ExoU targeting to host membranes.

Authors:  Tzvia I Springer; Terry-Elinor Reid; Samantha L Gies; Jimmy B Feix
Journal:  J Biol Chem       Date:  2019-10-29       Impact factor: 5.157

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