Literature DB >> 26476928

Graph-guided joint prediction of class label and clinical scores for the Alzheimer's disease.

Guan Yu1, Yufeng Liu1,2,3, Dinggang Shen4,5.   

Abstract

Accurate diagnosis of Alzheimer's disease and its prodromal stage, i.e., mild cognitive impairment, is very important for early treatment. Over the last decade, various machine learning methods have been proposed to predict disease status and clinical scores from brain images. It is worth noting that many features extracted from brain images are correlated significantly. In this case, feature selection combined with the additional correlation information among features can effectively improve classification/regression performance. Typically, the correlation information among features can be modeled by the connectivity of an undirected graph, where each node represents one feature and each edge indicates that the two involved features are correlated significantly. In this paper, we propose a new graph-guided multi-task learning method incorporating this undirected graph information to predict multiple response variables (i.e., class label and clinical scores) jointly. Specifically, based on the sparse undirected feature graph, we utilize a new latent group Lasso penalty to encourage the correlated features to be selected together. Furthermore, this new penalty also encourages the intrinsic correlated tasks to share a common feature subset. To validate our method, we have performed many numerical studies using simulated datasets and the Alzheimer's Disease Neuroimaging Initiative dataset. Compared with the other methods, our proposed method has very promising performance.

Entities:  

Keywords:  Alzheimer’s disease; Group Lasso; Magnetic resonance imaging (MRI); Multi-task learning; Partial correlation; Positron emission tomography (PET); Undirected graph

Mesh:

Year:  2015        PMID: 26476928      PMCID: PMC4834286          DOI: 10.1007/s00429-015-1132-6

Source DB:  PubMed          Journal:  Brain Struct Funct        ISSN: 1863-2653            Impact factor:   3.270


  28 in total

1.  Prediction of AD with MRI-based hippocampal volume in mild cognitive impairment.

Authors:  C R Jack; R C Petersen; Y C Xu; P C O'Brien; G E Smith; R J Ivnik; B F Boeve; S C Waring; E G Tangalos; E Kokmen
Journal:  Neurology       Date:  1999-04-22       Impact factor: 9.910

2.  Hippocampal formation glucose metabolism and volume losses in MCI and AD.

Authors:  S De Santi; M J de Leon; H Rusinek; A Convit; C Y Tarshish; A Roche; W H Tsui; E Kandil; M Boppana; K Daisley; G J Wang; D Schlyer; J Fowler
Journal:  Neurobiol Aging       Date:  2001 Jul-Aug       Impact factor: 4.673

3.  Robust deformable-surface-based skull-stripping for large-scale studies.

Authors:  Yaping Wang; Jingxin Nie; Pew-Thian Yap; Feng Shi; Lei Guo; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

4.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data.

Authors:  J G Sled; A P Zijdenbos; A C Evans
Journal:  IEEE Trans Med Imaging       Date:  1998-02       Impact factor: 10.048

5.  Estimation of functional connectivity in fMRI data using stability selection-based sparse partial correlation with elastic net penalty.

Authors:  Srikanth Ryali; Tianwen Chen; Kaustubh Supekar; Vinod Menon
Journal:  Neuroimage       Date:  2011-12-01       Impact factor: 6.556

6.  Different regional patterns of cortical thinning in Alzheimer's disease and frontotemporal dementia.

Authors:  An-Tao Du; Norbert Schuff; Joel H Kramer; Howard J Rosen; Maria Luisa Gorno-Tempini; Katherine Rankin; Bruce L Miller; Michael W Weiner
Journal:  Brain       Date:  2007-03-12       Impact factor: 13.501

7.  High-dimensional pattern regression using machine learning: from medical images to continuous clinical variables.

Authors:  Ying Wang; Yong Fan; Priyanka Bhatt; Christos Davatzikos
Journal:  Neuroimage       Date:  2010-01-04       Impact factor: 6.556

8.  Longitudinal changes of CSF biomarkers in memory clinic patients.

Authors:  F H Bouwman; W M van der Flier; N S M Schoonenboom; E J van Elk; A Kok; F Rijmen; M A Blankenstein; P Scheltens
Journal:  Neurology       Date:  2007-09-04       Impact factor: 9.910

9.  Alzheimer disease: quantitative structural neuroimaging for detection and prediction of clinical and structural changes in mild cognitive impairment.

Authors:  Linda K McEvoy; Christine Fennema-Notestine; J Cooper Roddey; Donald J Hagler; Dominic Holland; David S Karow; Christopher J Pung; James B Brewer; Anders M Dale
Journal:  Radiology       Date:  2009-02-06       Impact factor: 11.105

10.  Healthy brain aging: a meeting report from the Sylvan M. Cohen Annual Retreat of the University of Pennsylvania Institute on Aging.

Authors:  Lisa J Bain; Kathy Jedrziewski; Marcelle Morrison-Bogorad; Marilyn Albert; Carl Cotman; Hugh Hendrie; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2008-10-22       Impact factor: 21.566

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  8 in total

Review 1.  Machine learning studies on major brain diseases: 5-year trends of 2014-2018.

Authors:  Koji Sakai; Kei Yamada
Journal:  Jpn J Radiol       Date:  2018-11-29       Impact factor: 2.374

Review 2.  Recent publications from the Alzheimer's Disease Neuroimaging Initiative: Reviewing progress toward improved AD clinical trials.

Authors:  Michael W Weiner; Dallas P Veitch; Paul S Aisen; Laurel A Beckett; Nigel J Cairns; Robert C Green; Danielle Harvey; Clifford R Jack; William Jagust; John C Morris; Ronald C Petersen; Andrew J Saykin; Leslie M Shaw; Arthur W Toga; John Q Trojanowski
Journal:  Alzheimers Dement       Date:  2017-03-22       Impact factor: 21.566

Review 3.  A review on neuroimaging-based classification studies and associated feature extraction methods for Alzheimer's disease and its prodromal stages.

Authors:  Saima Rathore; Mohamad Habes; Muhammad Aksam Iftikhar; Amanda Shacklett; Christos Davatzikos
Journal:  Neuroimage       Date:  2017-04-13       Impact factor: 6.556

4.  An artificial neural network model for clinical score prediction in Alzheimer disease using structural neuroimaging measures

Authors:  Nikhil Bhagwat; Jon Pipitone; Aristotle N. Voineskos; M. Mallar Chakravarty
Journal:  J Psychiatry Neurosci       Date:  2019-07-01       Impact factor: 6.186

Review 5.  How random is the random forest? Random forest algorithm on the service of structural imaging biomarkers for Alzheimer's disease: from Alzheimer's disease neuroimaging initiative (ADNI) database.

Authors:  Stavros I Dimitriadis; Dimitris Liparas
Journal:  Neural Regen Res       Date:  2018-06       Impact factor: 5.135

6.  Regional Brain Fusion: Graph Convolutional Network for Alzheimer's Disease Prediction and Analysis.

Authors:  Wenchao Li; Jiaqi Zhao; Chenyu Shen; Jingwen Zhang; Ji Hu; Mang Xiao; Jiyong Zhang; Minghan Chen
Journal:  Front Neuroinform       Date:  2022-04-29       Impact factor: 4.081

Review 7.  Single subject prediction of brain disorders in neuroimaging: Promises and pitfalls.

Authors:  Mohammad R Arbabshirani; Sergey Plis; Jing Sui; Vince D Calhoun
Journal:  Neuroimage       Date:  2016-03-21       Impact factor: 6.556

8.  Cortical graph neural network for AD and MCI diagnosis and transfer learning across populations.

Authors:  Chong-Yaw Wee; Chaoqiang Liu; Annie Lee; Joann S Poh; Hui Ji; Anqi Qiu
Journal:  Neuroimage Clin       Date:  2019-07-04       Impact factor: 4.881

  8 in total

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