Literature DB >> 26474787

Impact of repetitive DNA on sex chromosome evolution in plants.

Roman Hobza1,2, Zdenek Kubat3, Radim Cegan3, Wojciech Jesionek3, Boris Vyskot3, Eduard Kejnovsky4.   

Abstract

Structurally and functionally diverged sex chromosomes have evolved in many animals as well as in some plants. Sex chromosomes represent a specific genomic region(s) with locally suppressed recombination. As a consequence, repetitive sequences involving transposable elements, tandem repeats (satellites and microsatellites), and organellar DNA accumulate on the Y (W) chromosomes. In this paper, we review the main types of repetitive elements, their gathering on the Y chromosome, and discuss new findings showing that not only accumulation of various repeats in non-recombining regions but also opposite processes form Y chromosome. The aim of this review is also to discuss the mechanisms of repetitive DNA spread involving (retro) transposition, DNA polymerase slippage or unequal crossing-over, as well as modes of repeat removal by ectopic recombination. The intensity of these processes differs in non-recombining region(s) of sex chromosomes when compared to the recombining parts of genome. We also speculate about the relationship between heterochromatinization and the formation of heteromorphic sex chromosomes.

Keywords:  microsatellites; recombination; repetitive sequences; sex chromosomes; tandem repeats (satellites); transposable elements

Mesh:

Substances:

Year:  2015        PMID: 26474787     DOI: 10.1007/s10577-015-9496-2

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  68 in total

1.  The role of chromosomal rearrangements in the evolution of Silene latifolia sex chromosomes.

Authors:  Roman Hobza; Eduard Kejnovsky; Boris Vyskot; Alex Widmer
Journal:  Mol Genet Genomics       Date:  2007-08-02       Impact factor: 3.291

2.  Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression.

Authors:  Jesse D Hollister; Brandon S Gaut
Journal:  Genome Res       Date:  2009-05-28       Impact factor: 9.043

3.  Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis.

Authors:  Jon Reinders; Marie Mirouze; Joël Nicolet; Jerzy Paszkowski
Journal:  EMBO Rep       Date:  2013-07-09       Impact factor: 8.807

4.  Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome.

Authors:  Zdenek Kubat; Jitka Zluvova; Ivan Vogel; Viera Kovacova; Tomas Cermak; Radim Cegan; Roman Hobza; Boris Vyskot; Eduard Kejnovsky
Journal:  New Phytol       Date:  2014-01-23       Impact factor: 10.151

5.  Chromosome painting of Y chromosomes and isolation of a Y chromosome-specific repetitive sequence in the dioecious plant Rumex acetosa.

Authors:  F Shibata; M Hizume; Y Kuroki
Journal:  Chromosoma       Date:  1999-08       Impact factor: 4.316

6.  A matter of life or death: how microsatellites emerge in and vanish from the human genome.

Authors:  Yogeshwar D Kelkar; Kristin A Eckert; Francesca Chiaromonte; Kateryna D Makova
Journal:  Genome Res       Date:  2011-10-12       Impact factor: 9.043

7.  An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution.

Authors:  Roman Hobza; Martina Lengerova; Julia Svoboda; Hana Kubekova; Eduard Kejnovsky; Boris Vyskot
Journal:  Chromosoma       Date:  2006-04-13       Impact factor: 4.316

8.  Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa.

Authors:  Pavlina Steflova; Viktor Tokan; Ivan Vogel; Matej Lexa; Jiri Macas; Petr Novak; Roman Hobza; Boris Vyskot; Eduard Kejnovsky
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

9.  Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation.

Authors:  Beatriz Vicoso; J J Emerson; Yulia Zektser; Shivani Mahajan; Doris Bachtrog
Journal:  PLoS Biol       Date:  2013-08-27       Impact factor: 8.029

10.  The key role of repeated DNAs in sex chromosome evolution in two fish species with ZW sex chromosome system.

Authors:  Marcelo de Bello Cioffi; Eduard Kejnovský; Vinicius Marquioni; Juliana Poltronieri; Wagner Franco Molina; Débora Diniz; Luiz Antonio Carlos Bertollo
Journal:  Mol Cytogenet       Date:  2012-06-01       Impact factor: 2.009

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  23 in total

1.  Repetitive DNA in eukaryotic genomes.

Authors:  Maria Assunta Biscotti; Ettore Olmo; J S Pat Heslop-Harrison
Journal:  Chromosome Res       Date:  2015-09       Impact factor: 5.239

Review 2.  Sex and the flower - developmental aspects of sex chromosome evolution.

Authors:  Roman Hobza; Vojtech Hudzieczek; Zdenek Kubat; Radim Cegan; Boris Vyskot; Eduard Kejnovsky; Bohuslav Janousek
Journal:  Ann Bot       Date:  2018-12-31       Impact factor: 4.357

Review 3.  Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes.

Authors:  Shu-Fen Li; Guo-Jun Zhang; Jin-Hong Yuan; Chuan-Liang Deng; Wu-Jun Gao
Journal:  Planta       Date:  2016-02-26       Impact factor: 4.116

4.  Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species.

Authors:  Tiago Ribeiro; André Marques; Petr Novák; Veit Schubert; André L L Vanzela; Jiri Macas; Andreas Houben; Andrea Pedrosa-Harand
Journal:  Chromosoma       Date:  2016-09-19       Impact factor: 4.316

5.  Fundamentally different repetitive element composition of sex chromosomes in Rumex acetosa.

Authors:  Wojciech Jesionek; Markéta Bodláková; Zdeněk Kubát; Radim Čegan; Boris Vyskot; Jan Vrána; Jan Šafář; Janka Puterova; Roman Hobza
Journal:  Ann Bot       Date:  2021-01-01       Impact factor: 4.357

6.  GISH painting of the Y chromosomes suggests advanced phases of sex chromosome evolution in three dioecious Cannabaceae species (Humulus lupulus, H. japonicus, and Cannabis sativa).

Authors:  Olga V Razumova; Mikhail G Divashuk; Oleg S Alexandrov; Gennady I Karlov
Journal:  Protoplasma       Date:  2022-05-21       Impact factor: 3.356

7.  A step forward in the genome characterization of the sugarcane borer, Diatraea saccharalis: karyotype analysis, sex chromosome system and repetitive DNAs through a cytogenomic approach.

Authors:  Ana E Gasparotto; Diogo Milani; Emiliano Martí; Ana Beatriz S M Ferretti; Vanessa B Bardella; Frederico Hickmann; Magda Zrzavá; František Marec; Diogo C Cabral-de-Mello
Journal:  Chromosoma       Date:  2022-10-11       Impact factor: 2.919

8.  Study and Physical Mapping of the Species-Specific Tandem Repeat CS-237 Linked with 45S Ribosomal DNA Intergenic Spacer in Cannabis sativa L.

Authors:  Oleg S Alexandrov; Dmitry V Romanov; Mikhail G Divashuk; Olga V Razumova; Daniil S Ulyanov; Gennady I Karlov
Journal:  Plants (Basel)       Date:  2022-05-24

9.  DPTEdb, an integrative database of transposable elements in dioecious plants.

Authors:  Shu-Fen Li; Guo-Jun Zhang; Xue-Jin Zhang; Jin-Hong Yuan; Chuan-Liang Deng; Lian-Feng Gu; Wu-Jun Gao
Journal:  Database (Oxford)       Date:  2016-05-12       Impact factor: 3.451

10.  The Dryas iulia Genome Supports Multiple Gains of a W Chromosome from a B Chromosome in Butterflies.

Authors:  James J Lewis; Francesco Cicconardi; Simon H Martin; Robert D Reed; Charles G Danko; Stephen H Montgomery
Journal:  Genome Biol Evol       Date:  2021-07-06       Impact factor: 3.416

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