Literature DB >> 26473327

Genetic algorithm optimized triply compensated pulses in NMR spectroscopy.

V S Manu1, Gianluigi Veglia2.   

Abstract

Sensitivity and resolution in NMR experiments are affected by magnetic field inhomogeneities (of both external and RF), errors in pulse calibration, and offset effects due to finite length of RF pulses. To remedy these problems, built-in compensation mechanisms for these experimental imperfections are often necessary. Here, we propose a new family of phase-modulated constant-amplitude broadband pulses with high compensation for RF inhomogeneity and heteronuclear coupling evolution. These pulses were optimized using a genetic algorithm (GA), which consists in a global optimization method inspired by Nature's evolutionary processes. The newly designed π and π/2 pulses belong to the 'type A' (or general rotors) symmetric composite pulses. These GA-optimized pulses are relatively short compared to other general rotors and can be used for excitation and inversion, as well as refocusing pulses in spin-echo experiments. The performance of the GA-optimized pulses was assessed in Magic Angle Spinning (MAS) solid-state NMR experiments using a crystalline U-(13)C, (15)N NAVL peptide as well as U-(13)C, (15)N microcrystalline ubiquitin. GA optimization of NMR pulse sequences opens a window for improving current experiments and designing new robust pulse sequences.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Composite pulses; Genetic algorithm; Pulse imperfections; RF inhomogeneity; Resonance offset; Triply compensated pulses; zz interactions

Mesh:

Substances:

Year:  2015        PMID: 26473327      PMCID: PMC4628891          DOI: 10.1016/j.jmr.2015.09.010

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  17 in total

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Journal:  J Magn Reson       Date:  2011-12       Impact factor: 2.229

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Journal:  J Magn Reson       Date:  2011-09-07       Impact factor: 2.229

6.  Second order gradient ascent pulse engineering.

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Journal:  NMR Biomed       Date:  1997-12       Impact factor: 4.044

8.  The Fantastic Four: A plug 'n' play set of optimal control pulses for enhancing NMR spectroscopy.

Authors:  Manoj Nimbalkar; Burkhard Luy; Thomas E Skinner; Jorge L Neves; Naum I Gershenzon; Kyryl Kobzar; Wolfgang Bermel; Steffen J Glaser
Journal:  J Magn Reson       Date:  2012-12-27       Impact factor: 2.229

9.  Controlling the dipole-dipole interaction using NMR composite rf pulses.

Authors:  Emmanuel Baudin
Journal:  J Chem Phys       Date:  2014-08-07       Impact factor: 3.488

10.  BEBE(tr) and BUBI: J-compensated concurrent shaped pulses for 1H-13C experiments.

Authors:  Sebastian Ehni; Burkhard Luy
Journal:  J Magn Reson       Date:  2013-04-28       Impact factor: 2.229

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  6 in total

1.  Optimization of identity operation in NMR spectroscopy via genetic algorithm: Application to the TEDOR experiment.

Authors:  V S Manu; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2016-09-27       Impact factor: 2.229

2.  Design and applications of water irradiation devoid RF pulses for ultra-high field biomolecular NMR spectroscopy.

Authors:  V S Manu; Cristina Olivieri; KowsalyaDevi Pavuluri; Gianluigi Veglia
Journal:  Phys Chem Chem Phys       Date:  2022-08-10       Impact factor: 3.945

3.  High-fidelity control of spin ensemble dynamics via artificial intelligence: from quantum computing to NMR spectroscopy and imaging.

Authors:  Manu Veliparambil Subrahmanian; KowsalyaDevi Pavuluri; Cristina Olivieri; Gianluigi Veglia
Journal:  PNAS Nexus       Date:  2022-08-05

4.  Achieving pure spin effects by artifact suppression in methyl adiabatic relaxation experiments.

Authors:  Fa-An Chao; Domarin Khago; R Andrew Byrd
Journal:  J Biomol NMR       Date:  2020-04-24       Impact factor: 2.835

5.  Enhancing the sensitivity of multidimensional NMR experiments by using triply-compensated π pulses.

Authors:  Youlin Xia; Paolo Rossi; Manu V Subrahmanian; Chengdong Huang; Tamjeed Saleh; Cristina Olivieri; Charalampos G Kalodimos; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2017-11-21       Impact factor: 2.835

Review 6.  Probing Protein-Protein Interactions Using Asymmetric Labeling and Carbonyl-Carbon Selective Heteronuclear NMR Spectroscopy.

Authors:  Erik K Larsen; Cristina Olivieri; Caitlin Walker; Manu V S; Jiali Gao; David A Bernlohr; Marco Tonelli; John L Markley; Gianluigi Veglia
Journal:  Molecules       Date:  2018-08-03       Impact factor: 4.411

  6 in total

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