Literature DB >> 26468181

Genomic Views of Transcriptional Enhancers: Essential Determinants of Cellular Identity and Activity-Dependent Responses in the CNS.

Jesse M Gray1, Tae-Kyung Kim2, Anne E West3, Alex S Nord4, Eirene Markenscoff-Papadimitriou5, Stavros Lomvardas6.   

Abstract

Sprinkled throughout the genome are a million regulatory sequences called transcriptional enhancers that activate gene promoters in the right cells, at the right time. Enhancers endow the brain with its incredible diversity of cell types and also translate neural activity into gene induction. Thanks to rapid advances in genomic technologies, it is now possible to identify thousands of enhancers rapidly, test their transcriptional function en masse, and address their neurobiological functions via genome editing. Enhancers also promise to be a great technological opportunity for neuroscience, offering the potential for cell-type-specific genetic labeling and manipulation without the need for transgenesis. The objective of this review and the accompanying 2015 SfN mini-symposium is to highlight the use of new and emerging genomic technologies to probe enhancer function in the nervous system. SIGNIFICANCE STATEMENT: Transcriptional enhancers turn on genes in the right cells, at the right time. Enhancers are also the genomic sequences that encode the incredible diversity of cell types in the brain and enable the brain to turn genes on in response to new experiences. New technology enables enhancers to be found and manipulated. The study of enhancers promises to inform our understanding of brain development and function. The application of enhancer technology holds promise in accelerating basic neuroscience research and enabling gene therapies to be targeted to specific cell types in the brain.
Copyright © 2015 the authors 0270-6474/15/3513819-08$15.00/0.

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Year:  2015        PMID: 26468181      PMCID: PMC4604220          DOI: 10.1523/JNEUROSCI.2622-15.2015

Source DB:  PubMed          Journal:  J Neurosci        ISSN: 0270-6474            Impact factor:   6.167


  79 in total

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2.  Intergenic transcription and transinduction of the human beta-globin locus.

Authors:  H L Ashe; J Monks; M Wijgerde; P Fraser; N J Proudfoot
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3.  Large-scale identification of coregulated enhancer networks in the adult human brain.

Authors:  Marit W Vermunt; Peter Reinink; Jeroen Korving; Ewart de Bruijn; Paul M Creyghton; Onur Basak; Geert Geeven; Pim W Toonen; Nico Lansu; Charles Meunier; Sebastiaan van Heesch; Hans Clevers; Wouter de Laat; Edwin Cuppen; Menno P Creyghton
Journal:  Cell Rep       Date:  2014-10-16       Impact factor: 9.423

4.  Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.

Authors:  Leighton J Core; André L Martins; Charles G Danko; Colin T Waters; Adam Siepel; John T Lis
Journal:  Nat Genet       Date:  2014-11-10       Impact factor: 38.330

5.  MEF2D drives photoreceptor development through a genome-wide competition for tissue-specific enhancers.

Authors:  Milena M Andzelm; Timothy J Cherry; David A Harmin; Annabel C Boeke; Charlotte Lee; Martin Hemberg; Basil Pawlyk; Athar N Malik; Steven W Flavell; Michael A Sandberg; Elio Raviola; Michael E Greenberg
Journal:  Neuron       Date:  2015-03-19       Impact factor: 17.173

6.  An epigenetic trap stabilizes singular olfactory receptor expression.

Authors:  David B Lyons; William E Allen; Tracie Goh; Lulu Tsai; Gilad Barnea; Stavros Lomvardas
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7.  Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.

Authors:  Minna U Kaikkonen; Nathanael J Spann; Sven Heinz; Casey E Romanoski; Karmel A Allison; Joshua D Stender; Hyun B Chun; David F Tough; Rab K Prinjha; Christopher Benner; Christopher K Glass
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8.  Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

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9.  Tissue-specific RNA expression marks distant-acting developmental enhancers.

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10.  Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain.

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Review 7.  Neurobiological functions of transcriptional enhancers.

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Review 10.  Applications of CRISPR/Cas9 in the Mammalian Central Nervous System.

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