Literature DB >> 32056273

Invited Review: Epigenetics in neurodevelopment.

R D Salinas1, D R Connolly2, H Song2,3,4,5,6,7.   

Abstract

Neural development requires the orchestration of dynamic changes in gene expression to regulate cell fate decisions. This regulation is heavily influenced by epigenetics, heritable changes in gene expression not directly explained by genomic information alone. An understanding of the complexity of epigenetic regulation is rapidly emerging through the development of novel technologies that can assay various features of epigenetics and gene regulation. Here, we provide a broad overview of several commonly investigated modes of epigenetic regulation, including DNA methylation, histone modifications, noncoding RNAs, as well as epitranscriptomics that describe modifications of RNA, in neurodevelopment and diseases. Rather than functioning in isolation, it is being increasingly appreciated that these various modes of gene regulation are dynamically interactive and coordinate the complex nature of neurodevelopment along multiple axes. Future work investigating these interactions will likely utilize 'multi-omic' strategies that assay cell fate dynamics in a high-dimensional and high-throughput fashion. Novel human neurodevelopmental models including iPSC and cerebral organoid systems may provide further insight into human-specific features of neurodevelopment and diseases.
© 2020 British Neuropathological Society.

Entities:  

Keywords:  DNA methylation; chromatin remodelling; developmental disorder; epitranscriptomics; neurogenesis

Mesh:

Year:  2020        PMID: 32056273      PMCID: PMC7174139          DOI: 10.1111/nan.12608

Source DB:  PubMed          Journal:  Neuropathol Appl Neurobiol        ISSN: 0305-1846            Impact factor:   8.090


  217 in total

1.  Methylation of histone H3 Lys 4 in coding regions of active genes.

Authors:  Bradley E Bernstein; Emily L Humphrey; Rachel L Erlich; Robert Schneider; Peter Bouman; Jun S Liu; Tony Kouzarides; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

2.  TET1 controls CNS 5-methylcytosine hydroxylation, active DNA demethylation, gene transcription, and memory formation.

Authors:  Garrett A Kaas; Chun Zhong; Dawn E Eason; Daniel L Ross; Raj V Vachhani; Guo-Li Ming; Jennifer R King; Hongjun Song; J David Sweatt
Journal:  Neuron       Date:  2013-09-18       Impact factor: 17.173

3.  Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.

Authors:  Alexander D Ramos; Aaron Diaz; Abhinav Nellore; Ryan N Delgado; Ki-Youb Park; Gabriel Gonzales-Roybal; Michael C Oldham; Jun S Song; Daniel A Lim
Journal:  Cell Stem Cell       Date:  2013-04-11       Impact factor: 24.633

4.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

5.  Effect of the autism-associated lncRNA Shank2-AS on architecture and growth of neurons.

Authors:  Ting Luo; Ping Liu; Xiao-Yan Wang; Le-Zhi Li; Li-Ping Zhao; Jin Huang; Ya-Min Li; Jin-Lan Ou; Xiao-Qing Peng
Journal:  J Cell Biochem       Date:  2018-08-30       Impact factor: 4.429

6.  DNA methylation presents distinct binding sites for human transcription factors.

Authors:  Shaohui Hu; Jun Wan; Yijing Su; Qifeng Song; Yaxue Zeng; Ha Nam Nguyen; Jaehoon Shin; Eric Cox; Hee Sool Rho; Crystal Woodard; Shuli Xia; Shuang Liu; Huibin Lyu; Guo-Li Ming; Herschel Wade; Hongjun Song; Jiang Qian; Heng Zhu
Journal:  Elife       Date:  2013-09-03       Impact factor: 8.140

7.  Gain-of-function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions.

Authors:  Patricia Heyn; Clare V Logan; Adeline Fluteau; Rachel C Challis; Tatsiana Auchynnikava; Carol-Anne Martin; Joseph A Marsh; Francesca Taglini; Fiona Kilanowski; David A Parry; Valerie Cormier-Daire; Chin-To Fong; Kate Gibson; Vivian Hwa; Lourdes Ibáñez; Stephen P Robertson; Giorgia Sebastiani; Juri Rappsilber; Robin C Allshire; Martin A M Reijns; Andrew Dauber; Duncan Sproul; Andrew P Jackson
Journal:  Nat Genet       Date:  2018-11-26       Impact factor: 38.330

8.  DNA methylation signature of human hippocampus in Alzheimer's disease is linked to neurogenesis.

Authors:  Miren Altuna; Amaya Urdánoz-Casado; Javier Sánchez-Ruiz de Gordoa; María V Zelaya; Alberto Labarga; Julie M J Lepesant; Miren Roldán; Idoia Blanco-Luquin; Álvaro Perdones; Rosa Larumbe; Ivonne Jericó; Carmen Echavarri; Iván Méndez-López; Luisa Di Stefano; Maite Mendioroz
Journal:  Clin Epigenetics       Date:  2019-06-19       Impact factor: 6.551

9.  Differential effects on neurodevelopment of FTO variants in obesity and bipolar disorder suggested by in silico prediction of functional impact: An analysis in Mexican population.

Authors:  Erasmo Saucedo-Uribe; Alma Delia Genis-Mendoza; Adriana Díaz-Anzaldúa; José Jaime Martínez-Magaña; Carlos Alfonso Tovilla-Zarate; Isela Juárez-Rojop; Nuria Lanzagorta; Michael Escamilla; Thelma Beatriz González-Castro; María Lilia López Narvaez; Yazmín Hernández-Díaz; Humberto Nicolini
Journal:  Brain Behav       Date:  2019-04-29       Impact factor: 2.708

Review 10.  Genomic Imprinting and Physiological Processes in Mammals.

Authors:  Valter Tucci; Anthony R Isles; Gavin Kelsey; Anne C Ferguson-Smith
Journal:  Cell       Date:  2019-02-21       Impact factor: 41.582

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  5 in total

1.  Adult stem cells and niche cells segregate gradually from common precursors that build the adult Drosophila ovary during pupal development.

Authors:  Amy Reilein; Helen V Kogan; Rachel Misner; Karen Sophia Park; Daniel Kalderon
Journal:  Elife       Date:  2021-09-30       Impact factor: 8.140

2.  Epigenetic landscape of stress surfeit disorders: Key role for DNA methylation dynamics.

Authors:  Eleonora Gatta; Vikram Saudagar; James Auta; Dennis R Grayson; Alessandro Guidotti
Journal:  Int Rev Neurobiol       Date:  2020-09-30       Impact factor: 3.230

Review 3.  Epigenetic regulation in Huntington's disease.

Authors:  Jae Wook Hyeon; Albert H Kim; Hiroko Yano
Journal:  Neurochem Int       Date:  2021-05-24       Impact factor: 4.297

Review 4.  Epigenetic Landscape of Methamphetamine Use Disorder.

Authors:  Jean Lud Cadet; Subramaniam Jayanthi
Journal:  Curr Neuropharmacol       Date:  2021       Impact factor: 7.708

Review 5.  Implications of Extended Inhibitory Neuron Development.

Authors:  Jae-Yeon Kim; Mercedes F Paredes
Journal:  Int J Mol Sci       Date:  2021-05-12       Impact factor: 5.923

  5 in total

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