Literature DB >> 26462716

The complete chloroplast genome of a medicinal plant Epimedium koreanum Nakai (Berberidaceae).

Jung-Hoon Lee1, Kyunghee Kim2,3, Na-Rae Kim1, Sang-Choon Lee2, Tae-Jin Yang2, Young-Dong Kim1.   

Abstract

Epimedium koreanum is a perennial medicinal plant distributed in Eastern Asia. The complete chloroplast genome sequences of E. koreanum was obtained by de novo assembly using whole genome next-generation sequences. The chloroplast genome of E. koreanum was 157 218 bp in length and separated into four distinct regions such as large single copy region (89 600 bp), small single copy region (17 222 bp) and a pair of inverted repeat regions (25 198 bp). The genome contained a total of 112 genes including 78 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis with the reported chloroplast genomes revealed that E. koreanum is most closely related to Berberis bealei, a traditional medicinal plant in the Berberidaceae family.

Entities:  

Keywords:  Chloroplast; Epimedium koreanum; genome sequence; medicinal plant

Mesh:

Year:  2015        PMID: 26462716     DOI: 10.3109/19401736.2015.1089492

Source DB:  PubMed          Journal:  Mitochondrial DNA A DNA Mapp Seq Anal        ISSN: 2470-1394            Impact factor:   1.514


  7 in total

1.  The Complete Chloroplast Genome Sequences of Five Epimedium Species: Lights into Phylogenetic and Taxonomic Analyses.

Authors:  Yanjun Zhang; Liuwen Du; Ao Liu; Jianjun Chen; Li Wu; Weiming Hu; Wei Zhang; Kyunghee Kim; Sang-Choon Lee; Tae-Jin Yang; Ying Wang
Journal:  Front Plant Sci       Date:  2016-03-15       Impact factor: 5.753

2.  Development of Plastid Genomic Resources for Discrimination and Classification of Epimedium wushanense (Berberidaceae).

Authors:  Mengyue Guo; Li Ren; Yanqin Xu; Baosheng Liao; Jingyuan Song; Ying Li; Nitin Mantri; Baolin Guo; Shilin Chen; Xiaohui Pang
Journal:  Int J Mol Sci       Date:  2019-08-16       Impact factor: 5.923

3.  The complete chloroplast genome of Epimedium pubescens Maxim. (Berberidaceae), a traditional Chinese medicine herb.

Authors:  Ruoqi Huang; Qiong Liang; Ying Wang; Tae-Jin Yang; Yanjun Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2020-05-12       Impact factor: 0.658

4.  The complete chloroplast genome of Epimedium brevicornu Maxim (Berberidaceae), a traditional Chinese medicine herb.

Authors:  Yanjun Zhang; Ruoqi Huang; Li Wu; Ying Wang; Tae Jin; Qiong Liang
Journal:  Mitochondrial DNA B Resour       Date:  2020-01-14       Impact factor: 0.658

5.  The complete chloroplast genome of Plagiorhegma dubia Maxim., a traditional Chinese medicinal herb.

Authors:  Caihong Wang; Ying Wang; Qiong Liang; Tae-Jin Yang; Zhilin Li; Yanjun Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2018-01-10       Impact factor: 0.658

6.  Plastid genome data provide new insights into the phylogeny and evolution of the genus Epimedium.

Authors:  Mengyue Guo; Xiaohui Pang; Yanqin Xu; Wenjun Jiang; Baosheng Liao; Jingsheng Yu; Jiang Xu; Jingyuan Song; Shilin Chen
Journal:  J Adv Res       Date:  2021-06-30       Impact factor: 10.479

Review 7.  Taxonomy of Epimedium (Berberidaceae) with special reference to Chinese species.

Authors:  Yanjun Zhang; Jianqiang Li; Ying Wang; Qiong Liang
Journal:  Chin Herb Med       Date:  2021-12-13
  7 in total

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