| Literature DB >> 26453014 |
B L Webster1,2, M Rabone3, T Pennance3,4, A M Emery3, F Allan3, A Gouvras3, S Knopp3,5,6, A Garba7, A A Hamidou7, K A Mohammed8, S M Ame8, D Rollinson3, J P Webster9,4.
Abstract
Unfortunately, the original version of this article [1], contained a mistake. In Table 1, the primers for Sh6 and Sh9 were included incorrectly. Instead of GGGATGTATGCAGACTTG TTGTTTGGCTGCAGTAAC and GCTGAGCTTGAGATTG CTTCTGTCCCATCGATACC they should have been Sh6 Forward Primer GGTGGATTACGCAATAG, Sh6 Reverse Primer TTTAATCAACCGGGTGTC and Sh9 Forward Primer GGGATGTATGCAGACTTG, Sh9 Reverse Primer TTGTTTGGCTGCAGTAAC respectively. A corrected version of Table 1 is included belowEntities:
Year: 2015 PMID: 26453014 PMCID: PMC4600265 DOI: 10.1186/s13071-015-1134-5
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Details of the 18 selected microsatellite loci and the characteristics of the two multiplex microsatellite PCR assays. Loci Sh1-15 are from Travis et al., 2013 and Loci C102, C111 and C131 are from Gower et al., 2011. For Niger = 0.596, = 0.609, for Pemba = 0.599, = 0.638. The overall = 0.597, = 0.623
| Panel 1 | Marker | Forward Primer 5'- 3' | Reverse Primer 5'- 3' | Dye | Size Range (bp) | Repeat | A | Niger | Zanzibar | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
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| Panel 1 | C102 | TGTCTCTGTGAATGACCGAAT | TTAGATGAATAATAATGTTGAAACCAC | VIC | 184-199 | ATT | 6 | 0.42 | 0.37 | 0.02 | 0.02 |
| Sh1 | GCATCCAATTTCGTACAC | CCACATTAGGCCAACAAG | VIC | 245-284 | AAT | 13 | 0.76 | 0.72 | 0.84 | 0.80 | |
| Sh14 | GTCCTCCTTCCCTCTTTG | CACATTCGTCCTAGATATCG | NED | 184-240 | ACTC | 15 | 0.94 | 0.85 | 0.86 | 0.88 | |
| C131 | CTTGTCATTTGGGCATTGTG | CATGGTGAGGTTCAAACGTG | NED | 253-265 | AAT | 4 | 0.00 | 0.00 | 0.00 | 0.00 | |
| Sh6 | GGTGGATTACGCAATAG | TTTAATCAACCGGGTGTC | NED | 309-321 | AAT | 7 | 0.48 | 0.44 | 0.84 | 0.76 | |
| Sh9 | GGGATGTATGCAGACTTG | TTGTTTGGCTGCAGTAAC | 6-FAM | 197-227 | AAT | 11 | 0.46 | 0.76 | 0.46 | 0.86 | |
| Sh3 | GCTGAGCTTGAGATTG | CTTCTGTCCCATCGATACC | 6-FAM | 270-366 | AAT | 30 | 0.76 | 0.86 | 0.94 | 0.86 | |
| C111 | CCCTTGTCTTCAATGCGTTA | GAACGTCTAACTGGCGATCA | PET | 201-225 | ATT | 9 | 0.74 | 0.67 | 0.76 | 0.68 | |
| Sh7 | TCCAAGCACCATTATCAAG | ACGGAAACTTGTTGAAATG | PET | 293-311 | AAT | 7 | 0.46 | 0.62 | 0.42 | 0.48 | |
| Panel 2 | Sh2 | TTAGTGTGTTTGGCTTCAAC | CCTCGAATGAAATCCTGAC | NED | 155-218 | AAT | 21 | 0.84 | 0.90 | 0.56 | 0.89 |
| Sh5 | TGTGCACAAGAAAGATTAAATG | ACGACAATGTTGCAAGTTC | NED | 263-314 | AAT | 16 | 0.78 | 0.81 | 0.36 | 0.48 | |
| Sh13 | GAGCAGCTATTTCGTATCG | ACCGTGGACAGTTCATCAG | 6-FAM | 163-211 | AAT | 17 | 0.78 | 0.72 | 0.68 | 0.64 | |
| Sh4 | CCCATCGCTGATATTAAAG | TCTAGTCGTCTTGGGATCC | 6-FAM | 268-313 | AAT | 13 | 0.84 | 0.78 | 0.72 | 0.79 | |
| Sh10 | CGCATGTCATACCTATCTCC | GCTTATCAGGCCTATCTCC | PET | 183-207 | AAT | 9 | 0.18 | 0.34 | 0.74 | 0.70 | |
| Sh12 | CGTCTTAGTGAGCCAGATG | CTCGTGGACATCATCAG | PET | 245-278 | AAC | 11 | 0.06 | 0.06 | 0.56 | 0.65 | |
| Sh8 | CTAAACTGGCAAGATTTC | CAACGTGCCTTTATTTC | PET | 282-321 | AAT | 14 | 0.76 | 0.81 | 0.84 | 0.83 | |
| Sh11 | TTGGTTTAGAAATTACATCACC | CCAACAATATTAATGGACAGC | VIC | 183-213 | ATC | 9 | 0.68 | 0.58 | 0.68 | 0.69 | |
| Sh15 | CTTTCAGTAGGATTTGTTG | CGACGTCAAGCACTGTAC | VIC | 274-301 | ATC | 10 | 0.78 | 0.65 | 0.50 | 0.466 | |
Panel = single mulitplex PCR. A = observed number of alleles. Dye = the fluorescent dye label of the forward primer (VIC = green, NED = yellow, 6-FAM = Blue, PET = red). = observed heterozygosity, = expected heterozygosity