Literature DB >> 26453014

Erratum to: Development of novel multiplex microsatellite polymerase chain reactions to enable high-throughput population genetic studies of Schistosoma haematobium.

B L Webster1,2, M Rabone3, T Pennance3,4, A M Emery3, F Allan3, A Gouvras3, S Knopp3,5,6, A Garba7, A A Hamidou7, K A Mohammed8, S M Ame8, D Rollinson3, J P Webster9,4.   

Abstract

Unfortunately, the original version of this article [1], contained a mistake. In Table 1, the primers for Sh6 and Sh9 were included incorrectly. Instead of GGGATGTATGCAGACTTG TTGTTTGGCTGCAGTAAC and GCTGAGCTTGAGATTG CTTCTGTCCCATCGATACC they should have been Sh6 Forward Primer GGTGGATTACGCAATAG, Sh6 Reverse Primer TTTAATCAACCGGGTGTC and Sh9 Forward Primer GGGATGTATGCAGACTTG, Sh9 Reverse Primer TTGTTTGGCTGCAGTAAC respectively. A corrected version of Table 1 is included below

Entities:  

Year:  2015        PMID: 26453014      PMCID: PMC4600265          DOI: 10.1186/s13071-015-1134-5

Source DB:  PubMed          Journal:  Parasit Vectors        ISSN: 1756-3305            Impact factor:   3.876


Unfortunately, the original version of this article [1], contained a mistake. In Table 1, the primers for Sh6 and Sh9 were included incorrectly. Instead of GGGATGTATGCAGACTTG TTGTTTGGCTGCAGTAAC and GCTGAGCTTGAGATTG CTTCTGTCCCATCGATACC they should have been Sh6 Forward Primer GGTGGATTACGCAATAG, Sh6 Reverse Primer TTTAATCAACCGGGTGTC and Sh9 Forward Primer GGGATGTATGCAGACTTG, Sh9 Reverse Primer TTGTTTGGCTGCAGTAAC respectively.
Table 1

Details of the 18 selected microsatellite loci and the characteristics of the two multiplex microsatellite PCR assays. Loci Sh1-15 are from Travis et al., 2013 and Loci C102, C111 and C131 are from Gower et al., 2011. For Niger  = 0.596,  = 0.609, for Pemba  = 0.599,  = 0.638. The overall  = 0.597,  = 0.623

Panel 1MarkerForward Primer 5'- 3'Reverse Primer 5'- 3'DyeSize Range (bp)RepeatANigerZanzibar
H o H e H o H e
Panel 1C102TGTCTCTGTGAATGACCGAATTTAGATGAATAATAATGTTGAAACCACVIC184-199ATT60.420.370.020.02
Sh1GCATCCAATTTCGTACACCCACATTAGGCCAACAAGVIC245-284AAT130.760.720.840.80
Sh14GTCCTCCTTCCCTCTTTGCACATTCGTCCTAGATATCGNED184-240ACTC150.940.850.860.88
C131CTTGTCATTTGGGCATTGTGCATGGTGAGGTTCAAACGTGNED253-265AAT40.000.000.000.00
Sh6GGTGGATTACGCAATAGTTTAATCAACCGGGTGTCNED309-321AAT70.480.440.840.76
Sh9GGGATGTATGCAGACTTGTTGTTTGGCTGCAGTAAC6-FAM197-227AAT110.460.760.460.86
Sh3GCTGAGCTTGAGATTGCTTCTGTCCCATCGATACC6-FAM270-366AAT300.760.860.940.86
C111CCCTTGTCTTCAATGCGTTAGAACGTCTAACTGGCGATCAPET201-225ATT90.740.670.760.68
Sh7TCCAAGCACCATTATCAAGACGGAAACTTGTTGAAATGPET293-311AAT70.460.620.420.48
Panel 2Sh2TTAGTGTGTTTGGCTTCAACCCTCGAATGAAATCCTGACNED155-218AAT210.840.900.560.89
Sh5TGTGCACAAGAAAGATTAAATGACGACAATGTTGCAAGTTCNED263-314AAT160.780.810.360.48
Sh13GAGCAGCTATTTCGTATCGACCGTGGACAGTTCATCAG6-FAM163-211AAT170.780.720.680.64
Sh4CCCATCGCTGATATTAAAGTCTAGTCGTCTTGGGATCC6-FAM268-313AAT130.840.780.720.79
Sh10CGCATGTCATACCTATCTCCGCTTATCAGGCCTATCTCCPET183-207AAT90.180.340.740.70
Sh12CGTCTTAGTGAGCCAGATGCTCGTGGACATCATCAGPET245-278AAC110.060.060.560.65
Sh8CTAAACTGGCAAGATTTCCAACGTGCCTTTATTTCPET282-321AAT140.760.810.840.83
Sh11TTGGTTTAGAAATTACATCACCCCAACAATATTAATGGACAGCVIC183-213ATC90.680.580.680.69
Sh15CTTTCAGTAGGATTTGTTGCGACGTCAAGCACTGTACVIC274-301ATC100.780.650.500.466

Panel = single mulitplex PCR. A = observed number of alleles. Dye = the fluorescent dye label of the forward primer (VIC = green, NED = yellow, 6-FAM = Blue, PET = red).  = observed heterozygosity,  = expected heterozygosity

Details of the 18 selected microsatellite loci and the characteristics of the two multiplex microsatellite PCR assays. Loci Sh1-15 are from Travis et al., 2013 and Loci C102, C111 and C131 are from Gower et al., 2011. For Niger  = 0.596,  = 0.609, for Pemba  = 0.599,  = 0.638. The overall  = 0.597,  = 0.623 Panel = single mulitplex PCR. A = observed number of alleles. Dye = the fluorescent dye label of the forward primer (VIC = green, NED = yellow, 6-FAM = Blue, PET = red).  = observed heterozygosity,  = expected heterozygosity A corrected version of Table 1 is included below.
  1 in total

1.  Development of novel multiplex microsatellite polymerase chain reactions to enable high-throughput population genetic studies of Schistosoma haematobium.

Authors:  B L Webster; M Rabone; T Pennance; A M Emery; F Allan; A Gouvras; S Knopp; A Garba; A A Hamidou; K A Mohammed; S M Ame; D Rollinson; J P Webster
Journal:  Parasit Vectors       Date:  2015-08-20       Impact factor: 3.876

  1 in total
  1 in total

1.  Identification of Snails and Schistosoma of Medical Importance via Convolutional Neural Networks: A Proof-of-Concept Application for Human Schistosomiasis.

Authors:  Krti Tallam; Zac Yung-Chun Liu; Andrew J Chamberlin; Isabel J Jones; Pretom Shome; Gilles Riveau; Raphael A Ndione; Lydie Bandagny; Nicolas Jouanard; Paul Van Eck; Ton Ngo; Susanne H Sokolow; Giulio A De Leo
Journal:  Front Public Health       Date:  2021-07-15
  1 in total

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