Literature DB >> 26440895

Elevated RNA Editing Activity Is a Major Contributor to Transcriptomic Diversity in Tumors.

Nurit Paz-Yaacov1, Lily Bazak1, Ilana Buchumenski1, Hagit T Porath1, Miri Danan-Gotthold1, Binyamin A Knisbacher1, Eli Eisenberg2, Erez Y Levanon3.   

Abstract

Genomic mutations in key genes are known to drive tumorigenesis and have been the focus of much attention in recent years. However, genetic content also may change farther downstream. RNA editing alters the mRNA sequence from its genomic blueprint in a dynamic and flexible way. A few isolated cases of editing alterations in cancer have been reported previously. Here, we provide a transcriptome-wide characterization of RNA editing across hundreds of cancer samples from multiple cancer tissues, and we show that A-to-I editing and the enzymes mediating this modification are significantly altered, usually elevated, in most cancer types. Increased editing activity is found to be associated with patient survival. As is the case with somatic mutations in DNA, most of these newly introduced RNA mutations are likely passengers, but a few may serve as drivers that may be novel candidates for therapeutic and diagnostic purposes.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26440895     DOI: 10.1016/j.celrep.2015.08.080

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  132 in total

1.  A-to-I RNA Editing Contributes to Proteomic Diversity in Cancer.

Authors:  Xinxin Peng; Xiaoyan Xu; Yumeng Wang; David H Hawke; Shuangxing Yu; Leng Han; Zhicheng Zhou; Kamalika Mojumdar; Kang Jin Jeong; Marilyne Labrie; Yiu Huen Tsang; Minying Zhang; Yiling Lu; Patrick Hwu; Kenneth L Scott; Han Liang; Gordon B Mills
Journal:  Cancer Cell       Date:  2018-04-26       Impact factor: 31.743

Review 2.  Adenosine deaminase acting on RNA (ADAR1), a suppressor of double-stranded RNA-triggered innate immune responses.

Authors:  Charles E Samuel
Journal:  J Biol Chem       Date:  2019-02-01       Impact factor: 5.157

3.  RNA editing as an activator of self-renewal in cancer.

Authors:  Igal Germanguz; William E Lowry
Journal:  Stem Cell Investig       Date:  2016-10-31

Review 4.  Single-nucleotide variants in human RNA: RNA editing and beyond.

Authors:  Yan Guo; Hui Yu; David C Samuels; Wei Yue; Scott Ness; Ying-Yong Zhao
Journal:  Brief Funct Genomics       Date:  2019-02-14       Impact factor: 4.241

5.  Cancer genomics: The relevance of extensive editing in tumour transcriptomes.

Authors:  Lydia Shipman
Journal:  Nat Rev Cancer       Date:  2015-10-29       Impact factor: 60.716

6.  ADAR1 promotes robust hypoxia signaling via distinct regulation of multiple HIF-1α-inhibiting factors.

Authors:  Chung-Pei Ma; Hsuan Liu; Ian Yi-Feng Chang; Wan-Cheng Wang; Yi-Tung Chen; Shao-Min Wu; Hui-Wen Chen; Yu-Ping Kuo; Chieh-Tien Shih; Chuan-Yun Li; Bertrand Chin-Ming Tan
Journal:  EMBO Rep       Date:  2019-04-04       Impact factor: 8.807

Review 7.  ADAR RNA editing in human disease; more to it than meets the I.

Authors:  Angela Gallo; Dragana Vukic; David Michalík; Mary A O'Connell; Liam P Keegan
Journal:  Hum Genet       Date:  2017-09-14       Impact factor: 4.132

8.  Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown.

Authors:  Hachung Chung; Jorg J A Calis; Xianfang Wu; Tony Sun; Yingpu Yu; Stephanie L Sarbanes; Viet Loan Dao Thi; Abigail R Shilvock; H-Heinrich Hoffmann; Brad R Rosenberg; Charles M Rice
Journal:  Cell       Date:  2018-01-25       Impact factor: 41.582

9.  RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data.

Authors:  Mercedeh Movassagh; Nawaf Alomran; Prakriti Mudvari; Merve Dede; Cem Dede; Kamran Kowsari; Paula Restrepo; Edmund Cauley; Sonali Bahl; Muzi Li; Wesley Waterhouse; Krasimira Tsaneva-Atanasova; Nathan Edwards; Anelia Horvath
Journal:  Nucleic Acids Res       Date:  2016-08-30       Impact factor: 16.971

10.  RNA Editing Dynamically Rewrites the Cancer Code.

Authors:  Violeta Rayon-Estrada; F Nina Papavasiliou; Dewi Harjanto
Journal:  Trends Cancer       Date:  2015-11-26
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