Literature DB >> 26439502

Dating Tips for Divergence-Time Estimation.

Joseph E O'Reilly1, Mario Dos Reis2, Philip C J Donoghue3.   

Abstract

The molecular clock is the only viable means of establishing an accurate timescale for Life on Earth, but it remains reliant on a capricious fossil record for calibration. 'Tip-dating' promises a conceptual advance, integrating fossil species among their living relatives using molecular/morphological datasets and evolutionary models. Fossil species of known age establish calibration directly, and their phylogenetic uncertainty is accommodated through the co-estimation of time and topology. However, challenges remain, including a dearth of effective models of morphological evolution, rate correlation, the non-random nature of missing characters in fossil data, and, most importantly, accommodating uncertainty in fossil age. We show uncertainty in fossil-dating propagates to divergence-time estimates, yielding estimates that are older and less precise than those based on traditional node calibration. Ultimately, node and tip calibrations are not mutually incompatible and may be integrated to achieve more accurate and precise evolutionary timescales.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26439502     DOI: 10.1016/j.tig.2015.08.001

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  40 in total

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3.  Multiple morphological clocks and total-evidence tip-dating in mammals.

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5.  Biogeographic Dating of Speciation Times Using Paleogeographically Informed Processes.

Authors:  Michael J Landis
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6.  Topology, divergence dates, and macroevolutionary inferences vary between different tip-dating approaches applied to fossil theropods (Dinosauria).

Authors:  D W Bapst; A M Wright; N J Matzke; G T Lloyd
Journal:  Biol Lett       Date:  2016-07       Impact factor: 3.703

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Authors:  Nicole M Foley; Mark S Springer; Emma C Teeling
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-07-19       Impact factor: 6.237

8.  The Efficacy of Consensus Tree Methods for Summarizing Phylogenetic Relationships from a Posterior Sample of Trees Estimated from Morphological Data.

Authors:  Joseph E O'Reilly; Philip C J Donoghue
Journal:  Syst Biol       Date:  2018-03-01       Impact factor: 15.683

9.  Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus.

Authors:  Madlen Stange; Marcelo R Sánchez-Villagra; Walter Salzburger; Michael Matschiner
Journal:  Syst Biol       Date:  2018-07-01       Impact factor: 15.683

10.  Early plant defence against insect attack: involvement of reactive oxygen species in plant responses to insect egg deposition.

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