Literature DB >> 26418762

Widespread nuclease contamination in commonly used oxygen-scavenging systems.

Gayan Senavirathne1, Jiaquan Liu1, Miguel A Lopez1, Jeungphill Hanne1, Juana Martin-Lopez1, Jong-Bong Lee2,3, Kristine E Yoder1, Richard Fishel1,4.   

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Year:  2015        PMID: 26418762      PMCID: PMC4640458          DOI: 10.1038/nmeth.3588

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  5 in total

1.  Nonblinking and long-lasting single-molecule fluorescence imaging.

Authors:  Ivan Rasnik; Sean A McKinney; Taekjip Ha
Journal:  Nat Methods       Date:  2006-10-01       Impact factor: 28.547

Review 2.  The bright future of single-molecule fluorescence imaging.

Authors:  Manuel F Juette; Daniel S Terry; Michael R Wasserman; Zhou Zhou; Roger B Altman; Qinsi Zheng; Scott C Blanchard
Journal:  Curr Opin Chem Biol       Date:  2014-06-21       Impact factor: 8.822

3.  Structure and assembly of protocatechuate 3,4-dioxygenase.

Authors:  D H Ohlendorf; J D Lipscomb; P C Weber
Journal:  Nature       Date:  1988-11-24       Impact factor: 49.962

4.  Acidification of the oxygen scavenging system in single-molecule fluorescence studies: in situ sensing with a ratiometric dual-emission probe.

Authors:  Xinghua Shi; John Lim; Taekjip Ha
Journal:  Anal Chem       Date:  2010-07-15       Impact factor: 6.986

5.  An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments.

Authors:  Colin Echeverría Aitken; R Andrew Marshall; Joseph D Puglisi
Journal:  Biophys J       Date:  2007-10-05       Impact factor: 4.033

  5 in total
  13 in total

1.  Expression and Purification of Nuclease-Free Oxygen Scavenger Protocatechuate 3,4-Dioxygenase.

Authors:  Ryan K Messer; Miguel A Lopez; Gayan Senavirathne; Kristine E Yoder
Journal:  J Vis Exp       Date:  2019-11-08       Impact factor: 1.355

Review 2.  Coming Together: RNAs and Proteins Assemble under the Single-Molecule Fluorescence Microscope.

Authors:  Ameya P Jalihal; Paul E Lund; Nils G Walter
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

3.  Ligand Modulates Cross-Coupling between Riboswitch Folding and Transcriptional Pausing.

Authors:  Julia R Widom; Yuri A Nedialkov; Victoria Rai; Ryan L Hayes; Charles L Brooks; Irina Artsimovitch; Nils G Walter
Journal:  Mol Cell       Date:  2018-11-01       Impact factor: 17.970

4.  Cascading MutS and MutL sliding clamps control DNA diffusion to activate mismatch repair.

Authors:  Jiaquan Liu; Jeungphill Hanne; Brooke M Britton; Jared Bennett; Daehyung Kim; Jong-Bong Lee; Richard Fishel
Journal:  Nature       Date:  2016-11-16       Impact factor: 49.962

5.  Detection and Removal of Nuclease Contamination During Purification of Recombinant Prototype Foamy Virus Integrase.

Authors:  Miguel A Lopez; Randi M Mackler; Matthew P Altman; Kristine E Yoder
Journal:  J Vis Exp       Date:  2017-12-08       Impact factor: 1.355

6.  Single-molecule fluorescence studies on DNA looping.

Authors:  Jiyoun Jeong; Tung T Le; Harold D Kim
Journal:  Methods       Date:  2016-04-07       Impact factor: 3.608

7.  Expression and purification of nuclease-free protocatechuate 3,4-dioxygenase for prolonged single-molecule fluorescence imaging.

Authors:  Gayan Senavirathne; Miguel A Lopez; Ryan Messer; Richard Fishel; Kristine E Yoder
Journal:  Anal Biochem       Date:  2018-06-19       Impact factor: 3.365

8.  Absence of nuclease activity in commonly used oxygen-scavenging systems.

Authors:  Hailey L Gahlon; Paul Poudevigne-Durance; David Rueda
Journal:  BMC Res Notes       Date:  2017-11-21

9.  An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases.

Authors:  Kathryn H Gunn; John F Marko; Alfonso Mondragón
Journal:  Nat Struct Mol Biol       Date:  2017-04-17       Impact factor: 15.369

Review 10.  From single molecules to life: microscopy at the nanoscale.

Authors:  Bartosz Turkowyd; David Virant; Ulrike Endesfelder
Journal:  Anal Bioanal Chem       Date:  2016-09-09       Impact factor: 4.142

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