Literature DB >> 26414245

Hypothesis test of mediation effect in causal mediation model with high-dimensional continuous mediators.

Yen-Tsung Huang1, Wen-Chi Pan2.   

Abstract

Causal mediation modeling has become a popular approach for studying the effect of an exposure on an outcome through a mediator. However, current methods are not applicable to the setting with a large number of mediators. We propose a testing procedure for mediation effects of high-dimensional continuous mediators. We characterize the marginal mediation effect, the multivariate component-wise mediation effects, and the L2 norm of the component-wise effects, and develop a Monte-Carlo procedure for evaluating their statistical significance. To accommodate the setting with a large number of mediators and a small sample size, we further propose a transformation model using the spectral decomposition. Under the transformation model, mediation effects can be estimated using a series of regression models with a univariate transformed mediator, and examined by our proposed testing procedure. Extensive simulation studies are conducted to assess the performance of our methods for continuous and dichotomous outcomes. We apply the methods to analyze genomic data investigating the effect of microRNA miR-223 on a dichotomous survival status of patients with glioblastoma multiforme (GBM). We identify nine gene ontology sets with expression values that significantly mediate the effect of miR-223 on GBM survival.
© 2015, The International Biometric Society.

Entities:  

Keywords:  Causal mediation model; High-dimensional statistics; Hypothesis test; Integrative genomics; Multiple mediation; Natural indirect effect

Mesh:

Substances:

Year:  2015        PMID: 26414245     DOI: 10.1111/biom.12421

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  35 in total

1.  Testing for the indirect effect under the null for genome-wide mediation analyses.

Authors:  Richard Barfield; Jincheng Shen; Allan C Just; Pantel S Vokonas; Joel Schwartz; Andrea A Baccarelli; Tyler J VanderWeele; Xihong Lin
Journal:  Genet Epidemiol       Date:  2017-10-29       Impact factor: 2.135

2.  High-dimensional multivariate mediation with application to neuroimaging data.

Authors:  Oliver Y Chén; Ciprian Crainiceanu; Elizabeth L Ogburn; Brian S Caffo; Tor D Wager; Martin A Lindquist
Journal:  Biostatistics       Date:  2018-04-01       Impact factor: 5.899

3.  FWER and FDR control when testing multiple mediators.

Authors:  Joshua N Sampson; Simina M Boca; Steven C Moore; Ruth Heller
Journal:  Bioinformatics       Date:  2018-07-15       Impact factor: 6.937

4.  Mediation analysis in a case-control study when the mediator is a censored variable.

Authors:  Jian Wang; Jing Ning; Sanjay Shete
Journal:  Stat Med       Date:  2018-11-12       Impact factor: 2.373

5.  Penalized models for analysis of multiple mediators.

Authors:  Daniel J Schaid; Jason P Sinnwell
Journal:  Genet Epidemiol       Date:  2020-04-27       Impact factor: 2.135

6.  Estimating and testing the microbial causal mediation effect with high-dimensional and compositional microbiome data.

Authors:  Chan Wang; Jiyuan Hu; Martin J Blaser; Huilin Li
Journal:  Bioinformatics       Date:  2020-01-15       Impact factor: 6.937

7.  Causal Mediation Analysis of Survival Outcome with Multiple Mediators.

Authors:  Yen-Tsung Huang; Hwai-I Yang
Journal:  Epidemiology       Date:  2017-05       Impact factor: 4.822

8.  Bayesian shrinkage estimation of high dimensional causal mediation effects in omics studies.

Authors:  Yanyi Song; Xiang Zhou; Min Zhang; Wei Zhao; Yongmei Liu; Sharon L R Kardia; Ana V Diez Roux; Belinda L Needham; Jennifer A Smith; Bhramar Mukherjee
Journal:  Biometrics       Date:  2019-12-19       Impact factor: 2.571

9.  Sparse Principal Component based High-Dimensional Mediation Analysis.

Authors:  Yi Zhao; Martin A Lindquist; Brian S Caffo
Journal:  Comput Stat Data Anal       Date:  2019-09-03       Impact factor: 1.681

10.  Multiscale regression modeling in mouse supraspinatus tendons reveals that dynamic processes act as mediators in structure-function relationships.

Authors:  Brianne K Connizzo; Sheila M Adams; Thomas H Adams; Abbas F Jawad; David E Birk; Louis J Soslowsky
Journal:  J Biomech       Date:  2016-04-02       Impact factor: 2.712

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