Literature DB >> 26412777

Changes in Polysome Association of mRNA Throughout Growth and Development in Arabidopsis thaliana.

Shotaro Yamasaki1, Hideyuki Matsuura2, Taku Demura1, Ko Kato3.   

Abstract

Translational control is a key regulatory step in the expression of genes as proteins. In plant cells, the translational efficiency of mRNAs differs for different mRNA species, and the efficiency dynamically changes in various conditions. To gain a global view of translational control throughout growth and development, we performed genome-wide analysis of polysome association of mRNA during growth and leaf development in Arabidopsis thaliana by subjecting the mRNAs in polysomes to DNA microarray. This analysis revealed that the degree of polysome association of mRNA was different depending on the mRNA species, and the polysome association changed greatly throughout growth and development for each. In the growth stage, transcripts showed varying changes in polysome association from strongly depressed to unchanged, with the majority of transcripts showing dissociation from ribosomes. On the other hand, during leaf development, the polysome association of transcripts showed a normal distribution from repressed to activated mRNAs when comparing expanding and expanded leaves. In addition, functional category analysis of the microarray data suggested that translational control has a physiological significance in the plant growth and development process, especially in the categories of signaling and protein synthesis. In addition to this, we compared changes in polysome association of mRNAs between various conditions and characterized translational controls in each. This result suggested that mRNA translation might be controlled by complicated mechanisms for response to each condition. Our results highlight the importance of dynamic changes in mRNA translation in plant development and growth.
© The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  Arabidopsis thaliana; Growth stage; Leaf development; Microarray; Polysomes; Translational control

Mesh:

Substances:

Year:  2015        PMID: 26412777     DOI: 10.1093/pcp/pcv133

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  5 in total

1.  Identification of 5'-untranslated regions that function as effective translational enhancers in monocotyledonous plant cells using a novel method of genome-wide analysis.

Authors:  Shotaro Yamasaki; Atsunobu Suzuki; Yasuaki Yamano; Harunori Kawabe; Daishin Ueno; Taku Demura; Ko Kato
Journal:  Plant Biotechnol (Tokyo)       Date:  2018-12-25       Impact factor: 1.133

Review 2.  Translational gene regulation in plants: A green new deal.

Authors:  Ricardo A Urquidi Camacho; Ansul Lokdarshi; Albrecht G von Arnim
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-05-04       Impact factor: 9.349

Review 3.  Emerging Roles and Landscape of Translating mRNAs in Plants.

Authors:  Gaurav Sablok; Jonathan J Powell; Kemal Kazan
Journal:  Front Plant Sci       Date:  2017-09-01       Impact factor: 5.753

4.  Multiplexing polysome profiling experiments to study translation in Escherichia coli.

Authors:  Huong Le Nguyen; Marie-Pierre Duviau; Muriel Cocaign-Bousquet; Sébastien Nouaille; Laurence Girbal
Journal:  PLoS One       Date:  2019-02-19       Impact factor: 3.240

5.  Feature selection for RNA cleavage efficiency at specific sites using the LASSO regression model in Arabidopsis thaliana.

Authors:  Daishin Ueno; Harunori Kawabe; Shotaro Yamasaki; Taku Demura; Ko Kato
Journal:  BMC Bioinformatics       Date:  2021-07-22       Impact factor: 3.169

  5 in total

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