Literature DB >> 26412662

Ultracentrifuge Methods for the Analysis of Polysaccharides, Glycoconjugates, and Lignins.

Stephen E Harding1, Gary G Adams2, Fahad Almutairi3, Qushmua Alzahrani3, Tayyibe Erten3, M Samil Kök4, Richard B Gillis2.   

Abstract

Although like proteins, polysaccharides are synthesized by enzymes, unlike proteins there is no template. This means that they are polydisperse, do not generally have compact folded structures, and are often very large with greater nonideality behavior in solution. This chapter considers the relevant analytical ultracentrifuge methodology available for characterizing these and related carbohydrate-based systems and information this methodology supplies, in terms of sizes, shapes, and interactions using a comprehensive range of examples, including glycoconjugates and lignins. The relevance and potential of recent software developments such as SEDFIT-MSTAR, the Extended Fujita algorithm, and HYDFIT are considered.
© 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Extended Fujita; Flexibility; Interactions; SEDFIT-MSTAR; Shape; Size

Mesh:

Substances:

Year:  2015        PMID: 26412662     DOI: 10.1016/bs.mie.2015.06.043

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  11 in total

1.  Application of recent advances in hydrodynamic methods for characterising mucins in solution.

Authors:  Fahad M Almutairi; Jose-Gines Hernandez Cifre; Gary G Adams; M Samil Kök; Alan R Mackie; Jose Garcia de la Torre; Stephen E Harding
Journal:  Eur Biophys J       Date:  2015-11-23       Impact factor: 1.733

Review 2.  Analytical ultracentrifuge: an ideal tool for characterization of non-coding RNAs.

Authors:  Maulik D Badmalia; M Quadir Siddiqui; Tyler Mrozowich; Darren L Gemmill; Trushar R Patel
Journal:  Eur Biophys J       Date:  2020-10-16       Impact factor: 1.733

3.  Monochromatic multicomponent fluorescence sedimentation velocity for the study of high-affinity protein interactions.

Authors:  Huaying Zhao; Yan Fu; Carla Glasser; Eric J Andrade Alba; Mark L Mayer; George Patterson; Peter Schuck
Journal:  Elife       Date:  2016-07-20       Impact factor: 8.140

4.  A glycoconjugate of Haemophilus influenzae Type b capsular polysaccharide with tetanus toxoid protein: hydrodynamic properties mainly influenced by the carbohydrate.

Authors:  Ali Saber Abdelhameed; Gary G Adams; Gordon A Morris; Fahad M Almutairi; Pierre Duvivier; Karel Conrath; Stephen E Harding
Journal:  Sci Rep       Date:  2016-02-26       Impact factor: 4.379

5.  Getting Closer to Absolute Molar Masses of Technical Lignins.

Authors:  Grigory Zinovyev; Irina Sulaeva; Stepan Podzimek; Dierk Rössner; Ilkka Kilpeläinen; Ivan Sumerskii; Thomas Rosenau; Antje Potthast
Journal:  ChemSusChem       Date:  2018-08-21       Impact factor: 8.928

6.  Full hydrodynamic reversibility of the weak dimerization of vancomycin and elucidation of its interaction with VanS monomers at clinical concentration.

Authors:  Mary K Phillips-Jones; Ryan Lithgo; Vlad Dinu; Richard B Gillis; John E Harding; Gary G Adams; Stephen E Harding
Journal:  Sci Rep       Date:  2017-10-05       Impact factor: 4.379

7.  Stabilisation of oil-in-water emulsions with non-chemical modified gelatinised starch.

Authors:  Miroslaw M Kasprzak; William Macnaughtan; Stephen Harding; Peter Wilde; Bettina Wolf
Journal:  Food Hydrocoll       Date:  2018-08       Impact factor: 9.147

8.  Use of the Extended Fujita method for representing the molecular weight and molecular weight distributions of native and processed oat beta-glucans.

Authors:  Guy A Channell; Gary G Adams; YuDong Lu; Richard B Gillis; Vlad Dinu; Myriam M-L Grundy; Balazs Bajka; Peter J Butterworth; Peter R Ellis; Alan Mackie; Simon Ballance; Stephen E Harding
Journal:  Sci Rep       Date:  2018-08-07       Impact factor: 4.379

9.  Measuring macromolecular size distributions and interactions at high concentrations by sedimentation velocity.

Authors:  Sumit K Chaturvedi; Jia Ma; Patrick H Brown; Huaying Zhao; P Schuck
Journal:  Nat Commun       Date:  2018-10-24       Impact factor: 14.919

10.  Controlled depolymerisation assessed by analytical ultracentrifugation of low molecular weight chitosan for use in archaeological conservation.

Authors:  Jennifer M K Wakefield; Richard B Gillis; Gary G Adams; Caitlin M A McQueen; Stephen E Harding
Journal:  Eur Biophys J       Date:  2018-03-17       Impact factor: 1.733

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