Literature DB >> 26412646

Next-Generation AUC: Analysis of Multiwavelength Analytical Ultracentrifugation Data.

Gary E Gorbet1, Joseph Z Pearson2, Aysha K Demeler1, Helmut Cölfen2, Borries Demeler3.   

Abstract

We describe important advances in methodologies for the analysis of multiwavelength data. In contrast to the Beckman-Coulter XL-A/I ultraviolet-visible light detector, multiwavelength detection is able to simultaneously collect sedimentation data for a large wavelength range in a single experiment. The additional dimension increases the data density by orders of magnitude, posing new challenges for data analysis and management. The additional data not only improve the statistics of the measurement but also provide new information for spectral characterization, which complements the hydrodynamic information. New data analysis and management approaches were integrated into the UltraScan software to address these challenges. In this chapter, we describe the enhancements and benefits realized by multiwavelength analysis and compare the results to those obtained from the traditional single-wavelength detector. We illustrate the advances offered by the new instruments by comparing results from mixtures that contain different ratios of protein and DNA samples, representing analytes with distinct spectral and hydrodynamic properties. For the first time, we demonstrate that the spectral dimension not only adds valuable detail, but when spectral properties are known, individual components with distinct spectral properties measured in a mixture by the multiwavelength system can be clearly separated and decomposed into traditional datasets for each of the spectrally distinct components, even when their sedimentation coefficients are virtually identical.
© 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Analytical ultracentrifugation; Hydrodynamic analysis; Multiwavelength detector; Optical detector development; Spectral analysis; UV–Vis absorbance

Mesh:

Substances:

Year:  2015        PMID: 26412646     DOI: 10.1016/bs.mie.2015.04.013

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  10 in total

1.  Spectral and Hydrodynamic Analysis of West Nile Virus RNA-Protein Interactions by Multiwavelength Sedimentation Velocity in the Analytical Ultracentrifuge.

Authors:  Jin Zhang; Joseph Z Pearson; Gary E Gorbet; Helmut Cölfen; Markus W Germann; Margo A Brinton; Borries Demeler
Journal:  Anal Chem       Date:  2016-12-15       Impact factor: 6.986

2.  A calibration disk for the correction of radial errors from chromatic aberration and rotor stretch in the Optima AUC™ analytical ultracentrifuge.

Authors:  Marielle Stoutjesdyk; Amy Henrickson; Geoff Minors; Borries Demeler
Journal:  Eur Biophys J       Date:  2020-05-09       Impact factor: 1.733

3.  Multi-wavelength analytical ultracentrifugation of human serum albumin complexed with porphyrin.

Authors:  Courtney N Johnson; Gary E Gorbet; Heidi Ramsower; Julio Urquidi; Lorenzo Brancaleon; Borries Demeler
Journal:  Eur Biophys J       Date:  2018-04-19       Impact factor: 1.733

4.  2D analysis of polydisperse core-shell nanoparticles using analytical ultracentrifugation.

Authors:  Johannes Walter; Gary Gorbet; Tugce Akdas; Doris Segets; Borries Demeler; Wolfgang Peukert
Journal:  Analyst       Date:  2016-12-19       Impact factor: 4.616

5.  Pre-Clinical In-Vitro Studies on Parameters Governing Immune Complex Formation.

Authors:  Marie Fichter; Gesa Richter; Alexander Bepperling; Paul Wassmann
Journal:  Pharmaceutics       Date:  2022-06-13       Impact factor: 6.525

6.  Multi-speed sedimentation velocity implementation in UltraScan-III.

Authors:  Gary E Gorbet; Subhashree Mohapatra; Borries Demeler
Journal:  Eur Biophys J       Date:  2018-04-02       Impact factor: 1.733

7.  Measuring molecular interactions in solution using multi-wavelength analytical ultracentrifugation: combining spectral analysis with hydrodynamics.

Authors:  Borries Demeler
Journal:  Biochem (Lond)       Date:  2019-04-01

Review 8.  Using cryo-EM to uncover mechanisms of bacterial transcriptional regulation.

Authors:  David M Wood; Renwick C J Dobson; Christopher R Horne
Journal:  Biochem Soc Trans       Date:  2021-12-17       Impact factor: 5.407

9.  A new mode of SAM domain mediated oligomerization observed in the CASKIN2 neuronal scaffolding protein.

Authors:  Ekaterina Smirnova; Jamie J Kwan; Ryan Siu; Xin Gao; Georg Zoidl; Borries Demeler; Vivian Saridakis; Logan W Donaldson
Journal:  Cell Commun Signal       Date:  2016-08-22       Impact factor: 5.712

10.  Moving analytical ultracentrifugation software to a good manufacturing practices (GMP) environment.

Authors:  Alexey Savelyev; Gary E Gorbet; Amy Henrickson; Borries Demeler
Journal:  PLoS Comput Biol       Date:  2020-06-19       Impact factor: 4.779

  10 in total

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