Literature DB >> 26410654

Implementation of GPU-accelerated back projection for EPR imaging.

Zhiwei Qiao1, Gage Redler2, Boris Epel3, Yuhua Qian1, Howard Halpern3.   

Abstract

Electron paramagnetic resonance (EPR) Imaging (EPRI) is a robust method for measuring in vivo oxygen concentration (pO2). For 3D pulse EPRI, a commonly used reconstruction algorithm is the filtered backprojection (FBP) algorithm, in which the backprojection process is computationally intensive and may be time consuming when implemented on a CPU. A multistage implementation of the backprojection can be used for acceleration, however it is not flexible (requires equal linear angle projection distribution) and may still be time consuming. In this work, single-stage backprojection is implemented on a GPU (Graphics Processing Units) having 1152 cores to accelerate the process. The GPU implementation results in acceleration by over a factor of 200 overall and by over a factor of 3500 if only the computing time is considered. Some important experiences regarding the implementation of GPU-accelerated backprojection for EPRI are summarized. The resulting accelerated image reconstruction is useful for real-time image reconstruction monitoring and other time sensitive applications.

Entities:  

Keywords:  EPR; EPR imaging; GPU; acceleration; backprojection

Mesh:

Year:  2015        PMID: 26410654      PMCID: PMC4825055          DOI: 10.3233/XST-150498

Source DB:  PubMed          Journal:  J Xray Sci Technol        ISSN: 0895-3996            Impact factor:   1.535


  14 in total

1.  Spatially uniform sampling in 4-D EPR spectral-spatial imaging.

Authors:  Kang-Hyun Ahn; Howard J Halpern
Journal:  J Magn Reson       Date:  2006-12-15       Impact factor: 2.229

2.  A parametric approach to spectral-spatial EPR imaging.

Authors:  Subhojit Som; Lee C Potter; Rizwan Ahmad; Periannan Kuppusamy
Journal:  J Magn Reson       Date:  2007-01-12       Impact factor: 2.229

3.  Enhanced resolution for EPR imaging by two-step deblurring.

Authors:  Rizwan Ahmad; Bradley Clymer; Deepti S Vikram; Yuanmu Deng; Hiroshi Hirata; Jay L Zweier; Periannan Kuppusamy
Journal:  J Magn Reson       Date:  2006-11-20       Impact factor: 2.229

4.  Object dependent sweep width reduction with spectral-spatial EPR imaging.

Authors:  Kang-Hyun Ahn; Howard J Halpern
Journal:  J Magn Reson       Date:  2007-02-02       Impact factor: 2.229

5.  Simulation of 4D spectral-spatial EPR images.

Authors:  Kang-Hyun Ahn; Howard J Halpern
Journal:  J Magn Reson       Date:  2007-03-01       Impact factor: 2.229

6.  Comparison of local and global angular interpolation applied to spectral-spatial EPR image reconstruction.

Authors:  Kang-Hyun Ahn; Howard J Halpern
Journal:  Med Phys       Date:  2007-03       Impact factor: 4.071

7.  EPR oximetry in three spatial dimensions using sparse spin distribution.

Authors:  Subhojit Som; Lee C Potter; Rizwan Ahmad; Deepti S Vikram; Periannan Kuppusamy
Journal:  J Magn Reson       Date:  2008-05-14       Impact factor: 2.229

8.  Real-time reconstruction of sensitivity encoded radial magnetic resonance imaging using a graphics processing unit.

Authors:  Thomas Sangild Sørensen; David Atkinson; Tobias Schaeffter; Michael Schacht Hansen
Journal:  IEEE Trans Med Imaging       Date:  2009-07-21       Impact factor: 10.048

Review 9.  GPU computing in medical physics: a review.

Authors:  Guillem Pratx; Lei Xing
Journal:  Med Phys       Date:  2011-05       Impact factor: 4.071

10.  Principal component analysis enhances SNR for dynamic electron paramagnetic resonance oxygen imaging of cycling hypoxia in vivo.

Authors:  Gage Redler; Boris Epel; Howard J Halpern
Journal:  Magn Reson Med       Date:  2013-02-07       Impact factor: 4.668

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  1 in total

1.  Algebraic reconstruction of 3D spatial EPR images from high numbers of noisy projections: An improved image reconstruction technique for high resolution fast scan EPR imaging.

Authors:  Denis A Komarov; Alexandre Samouilov; Rizwan Ahmad; Jay L Zweier
Journal:  J Magn Reson       Date:  2020-08-25       Impact factor: 2.229

  1 in total

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